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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 258 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v99:A4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    2 4v99:A5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    3 4v99:AA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    4 4v99:AB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    5 4v99:AF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    6 4v99:AG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    7 4v99:AK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    8 4v99:AL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    9 4v99:AP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    10 4v99:AP (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    11 4v99:AQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    12 4v99:AU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    13 4v99:AV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    14 4v99:AZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    15 4v99:Aa (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    16 4v99:Ae (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    17 4v99:Af (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    18 4v99:Aj (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    19 4v99:Ak (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    20 4v99:Ao (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    21 4v99:Ap (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    22 4v99:At (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    23 4v99:Au (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    24 4v99:Au (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    25 4v99:Ay (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    26 4v99:Az (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    27 4v99:B4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    28 4v99:B5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    29 4v99:BA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    30 4v99:BB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    31 4v99:BF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    32 4v99:BG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    33 4v99:BK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    34 4v99:BL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    35 4v99:BP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    36 4v99:BQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    37 4v99:BU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    38 4v99:BV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    39 4v99:BZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    40 4v99:Ba (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    41 4v99:Be (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    42 4v99:Bf (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    43 4v99:Bj (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    44 4v99:Bk (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    45 4v99:Bo (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    46 4v99:Bp (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    47 4v99:Bt (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    48 4v99:Bu (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    49 4v99:By (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    50 4v99:Bz (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    51 4v99:C4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    52 4v99:C5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    53 4v99:CA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    54 4v99:CB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    55 4v99:CF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    56 4v99:CG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    57 4v99:CK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    58 4v99:CL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    59 4v99:CP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    60 4v99:CP (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    61 4v99:CQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    62 4v99:CU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    63 4v99:CV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    64 4v99:CZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    65 4v99:Ca (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    66 4v99:Ce (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    67 4v99:Cf (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    68 4v99:Cj (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    69 4v99:Ck (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    70 4v99:Co (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    71 4v99:Cp (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    72 4v99:Ct (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    73 4v99:Cu (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    74 4v99:Cy (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    75 4v99:Cz (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    76 4v99:D4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    77 4v99:D5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    78 4v99:DA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    79 4v99:DB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    80 4v99:DF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    81 4v99:DG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    82 4v99:DK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    83 4v99:DL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    84 4v99:DP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    85 4v99:DP (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    86 4v99:DQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    87 4v99:DU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    88 4v99:DV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    89 4v99:DZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    90 4v99:Da (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    91 4v99:De (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    92 4v99:Df (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    93 4v99:Dj (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    94 4v99:Dj (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    95 4v99:Dk (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    96 4v99:Do (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    97 4v99:Dp (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    98 4v99:Dt (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    99 4v99:Du (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    100 4v99:Dy (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    101 4v99:Dz (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    102 4v99:E4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    103 4v99:E5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    104 4v99:EA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    105 4v99:EB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    106 4v99:EF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    107 4v99:EG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    108 4v99:EK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    109 4v99:EL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    110 4v99:EP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    111 4v99:EQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    112 4v99:EU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    113 4v99:EV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    114 4v99:EZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    115 4v99:Ea (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    116 4v99:Ee (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    117 4v99:Ef (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    118 4v99:Ej (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    119 4v99:Ek (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    120 4v99:Eo (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    121 4v99:Ep (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    122 4v99:Et (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    123 4v99:Eu (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    124 4v99:Ey (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    125 4v99:Ez (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    126 4v99:F4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    127 4v99:F5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    128 4v99:FA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    129 4v99:FB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    130 4v99:FF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    131 4v99:FG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    132 4v99:FK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    133 4v99:FL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    134 4v99:FP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    135 4v99:FQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    136 4v99:FU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    137 4v99:FU (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    138 4v99:FV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    139 4v99:FZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    140 4v99:Fa (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    141 4v99:Fe (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    142 4v99:Ff (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    143 4v99:Fj (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    144 4v99:Fk (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    145 4v99:Fk (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    146 4v99:Fo (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    147 4v99:Fo (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    148 4v99:Fp (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    149 4v99:Ft (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    150 4v99:Fu (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    151 4v99:Fy (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    152 4v99:Fz (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    153 4v99:G4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    154 4v99:G5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    155 4v99:GA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    156 4v99:GB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    157 4v99:GF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    158 4v99:GG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    159 4v99:GK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    160 4v99:GL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    161 4v99:GL (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    162 4v99:GP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    163 4v99:GQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    164 4v99:GU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    165 4v99:GU (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    166 4v99:GV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    167 4v99:GW (2.9) BS01 CA ? GO:0005198 ... P89036 23123270
    168 4v99:GZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    169 4v99:Ga (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    170 4v99:Ge (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    171 4v99:Ge (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    172 4v99:Gf (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    173 4v99:Gj (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    174 4v99:Gk (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    175 4v99:Go (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    176 4v99:Gp (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177 4v99:Gt (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    178 4v99:Gu (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    179 4v99:Gy (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    180 4v99:Gz (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    181 4v99:H4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    182 4v99:H5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    183 4v99:HA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    184 4v99:HB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    185 4v99:HF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    186 4v99:HG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    187 4v99:HK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    188 4v99:HL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    189 4v99:HP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    190 4v99:HP (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    191 4v99:HQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    192 4v99:HU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    193 4v99:HV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    194 4v99:HZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    195 4v99:HZ (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    196 4v99:Ha (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    197 4v99:He (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    198 4v99:Hf (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    199 4v99:Hg (2.9) BS01 CA ? GO:0005198 ... P89036 23123270
    200 4v99:Hj (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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