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BioLiP
Download all results in tab-seperated text for 74 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v94:A (3.8) BS01 ADP ? GO:0005515 ... P12612 22503819
    2 4v94:A (3.8) BS02 BEF ? GO:0005515 ... P12612 22503819
    3 4v94:B (3.8) BS01 ADP ? GO:0005515 ... P39076 22503819
    4 4v94:B (3.8) BS02 BEF ? GO:0005515 ... P39076 22503819
    5 4v94:C (3.8) BS01 ADP ? GO:0005524 ... P39077 22503819
    6 4v94:C (3.8) BS02 BEF ? GO:0005524 ... P39077 22503819
    7 4v94:D (3.8) BS01 ADP ? GO:0005524 ... P39078 22503819
    8 4v94:D (3.8) BS02 BEF ? GO:0005524 ... P39078 22503819
    9 4v94:E (3.8) BS01 MG ? GO:0005524 ... P40413 22503819
    10 4v94:E (3.8) BS02 ADP ? GO:0005524 ... P40413 22503819
    11 4v94:E (3.8) BS03 BEF ? GO:0005524 ... P40413 22503819
    12 4v94:F (3.8) BS01 MG ? GO:0005524 ... P39079 22503819
    13 4v94:F (3.8) BS02 ADP ? GO:0005524 ... P39079 22503819
    14 4v94:F (3.8) BS03 BEF ? GO:0005524 ... P39079 22503819
    15 4v94:G (3.8) BS01 ADP ? GO:0005524 ... P42943 22503819
    16 4v94:G (3.8) BS02 BEF ? GO:0005524 ... P42943 22503819
    17 4v94:H (3.8) BS01 ADP ? GO:0005524 ... P47079 22503819
    18 4v94:H (3.8) BS02 BEF ? GO:0005524 ... P47079 22503819
    19 4v94:I (3.8) BS01 MG ? GO:0005515 ... P12612 22503819
    20 4v94:I (3.8) BS02 ADP ? GO:0005515 ... P12612 22503819
    21 4v94:I (3.8) BS03 BEF ? GO:0005515 ... P12612 22503819
    22 4v94:J (3.8) BS01 ADP ? GO:0005515 ... P39076 22503819
    23 4v94:J (3.8) BS02 BEF ? GO:0005515 ... P39076 22503819
    24 4v94:K (3.8) BS01 ADP ? GO:0005524 ... P39077 22503819
    25 4v94:K (3.8) BS02 BEF ? GO:0005524 ... P39077 22503819
    26 4v94:L (3.8) BS01 MG ? GO:0005524 ... P39078 22503819
    27 4v94:L (3.8) BS02 ADP ? GO:0005524 ... P39078 22503819
    28 4v94:L (3.8) BS03 BEF ? GO:0005524 ... P39078 22503819
    29 4v94:M (3.8) BS01 ADP ? GO:0005524 ... P40413 22503819
    30 4v94:M (3.8) BS02 BEF ? GO:0005524 ... P40413 22503819
    31 4v94:N (3.8) BS01 MG ? GO:0005524 ... P39079 22503819
    32 4v94:N (3.8) BS02 ADP ? GO:0005524 ... P39079 22503819
    33 4v94:N (3.8) BS03 BEF ? GO:0005524 ... P39079 22503819
    34 4v94:O (3.8) BS01 ADP ? GO:0005524 ... P42943 22503819
    35 4v94:O (3.8) BS02 BEF ? GO:0005524 ... P42943 22503819
    36 4v94:P (3.8) BS01 ADP ? GO:0005524 ... P47079 22503819
    37 4v94:P (3.8) BS02 BEF ? GO:0005524 ... P47079 22503819
    38 4v94:a (3.8) BS01 ADP ? GO:0005515 ... P12612 22503819
    39 4v94:a (3.8) BS02 BEF ? GO:0005515 ... P12612 22503819
    40 4v94:b (3.8) BS01 ADP ? GO:0005515 ... P39076 22503819
    41 4v94:b (3.8) BS02 BEF ? GO:0005515 ... P39076 22503819
    42 4v94:c (3.8) BS01 MG ? GO:0005524 ... P39077 22503819
    43 4v94:c (3.8) BS02 ADP ? GO:0005524 ... P39077 22503819
    44 4v94:c (3.8) BS03 BEF ? GO:0005524 ... P39077 22503819
    45 4v94:d (3.8) BS01 ADP ? GO:0005524 ... P39078 22503819
    46 4v94:d (3.8) BS02 BEF ? GO:0005524 ... P39078 22503819
    47 4v94:e (3.8) BS01 MG ? GO:0005524 ... P40413 22503819
    48 4v94:e (3.8) BS02 ADP ? GO:0005524 ... P40413 22503819
    49 4v94:e (3.8) BS03 BEF ? GO:0005524 ... P40413 22503819
    50 4v94:f (3.8) BS01 MG ? GO:0005524 ... P39079 22503819
    51 4v94:f (3.8) BS02 ADP ? GO:0005524 ... P39079 22503819
    52 4v94:f (3.8) BS03 BEF ? GO:0005524 ... P39079 22503819
    53 4v94:g (3.8) BS01 ADP ? GO:0005524 ... P42943 22503819
    54 4v94:g (3.8) BS02 BEF ? GO:0005524 ... P42943 22503819
    55 4v94:h (3.8) BS01 ADP ? GO:0005524 ... P47079 22503819
    56 4v94:h (3.8) BS02 BEF ? GO:0005524 ... P47079 22503819
    57 4v94:i (3.8) BS01 ADP ? GO:0005515 ... P12612 22503819
    58 4v94:i (3.8) BS02 BEF ? GO:0005515 ... P12612 22503819
    59 4v94:j (3.8) BS01 ADP ? GO:0005515 ... P39076 22503819
    60 4v94:j (3.8) BS02 BEF ? GO:0005515 ... P39076 22503819
    61 4v94:k (3.8) BS01 ADP ? GO:0005524 ... P39077 22503819
    62 4v94:k (3.8) BS02 BEF ? GO:0005524 ... P39077 22503819
    63 4v94:l (3.8) BS01 ADP ? GO:0005524 ... P39078 22503819
    64 4v94:l (3.8) BS02 BEF ? GO:0005524 ... P39078 22503819
    65 4v94:m (3.8) BS01 MG ? GO:0005524 ... P40413 22503819
    66 4v94:m (3.8) BS02 ADP ? GO:0005524 ... P40413 22503819
    67 4v94:m (3.8) BS03 BEF ? GO:0005524 ... P40413 22503819
    68 4v94:n (3.8) BS01 MG ? GO:0005524 ... P39079 22503819
    69 4v94:n (3.8) BS02 ADP ? GO:0005524 ... P39079 22503819
    70 4v94:n (3.8) BS03 BEF ? GO:0005524 ... P39079 22503819
    71 4v94:o (3.8) BS01 ADP ? GO:0005524 ... P42943 22503819
    72 4v94:o (3.8) BS02 BEF ? GO:0005524 ... P42943 22503819
    73 4v94:p (3.8) BS01 ADP ? GO:0005524 ... P47079 22503819
    74 4v94:p (3.8) BS02 BEF ? GO:0005524 ... P47079 22503819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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