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BioLiP
Download all results in tab-seperated text for 76 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v8q:A0 (3.1) BS01 rna ? GO:0003735 ... P60493 22422985
    2 4v8q:A0 (3.1) BS02 rna ? GO:0003735 ... P60493 22422985
    3 4v8q:A0 (3.1) BS03 rna ? GO:0003735 ... P60493 22422985
    4 4v8q:A1 (3.1) BS01 rna ? GO:0003735 ... P60494 22422985
    5 4v8q:A2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 22422985
    6 4v8q:A3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 22422985
    7 4v8q:A3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 22422985
    8 4v8q:A5 (3.1) BS01 rna ? GO:0003735 ... P80339 22422985
    9 4v8q:A6 (3.1) BS01 rna ? GO:0000049 ... P35871 22422985
    10 4v8q:A6 (3.1) BS02 rna ? GO:0000049 ... P35871 22422985
    11 4v8q:A7 (3.1) BS01 rna ? GO:0003735 ... P80340 22422985
    12 4v8q:A8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 22422985
    13 4v8q:A9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 22422985
    14 4v8q:A9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 22422985
    15 4v8q:AC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 22422985
    16 4v8q:AC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 22422985
    17 4v8q:AD (3.1) BS01 rna ? GO:0002181 ... P60405 22422985
    18 4v8q:AE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 22422985
    19 4v8q:AF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 22422985
    20 4v8q:AG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 22422985
    21 4v8q:AG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 22422985
    22 4v8q:AG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 22422985
    23 4v8q:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 22422985
    24 4v8q:AJ (3.1) BS01 rna N/A N/A N/A 22422985
    25 4v8q:AK (3.1) BS01 rna N/A N/A N/A 22422985
    26 4v8q:AN (3.1) BS01 rna ? GO:0003729 ... P60488 22422985
    27 4v8q:AO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 22422985
    28 4v8q:AO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 22422985
    29 4v8q:AP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 22422985
    30 4v8q:AQ (3.1) BS01 rna ? GO:0000049 ... P60489 22422985
    31 4v8q:AQ (3.1) BS02 rna ? GO:0000049 ... P60489 22422985
    32 4v8q:AR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 22422985
    33 4v8q:AS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 22422985
    34 4v8q:AS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 22422985
    35 4v8q:AT (3.1) BS01 rna ? GO:0003735 ... P60490 22422985
    36 4v8q:AT (3.1) BS02 rna ? GO:0003735 ... P60490 22422985
    37 4v8q:AU (3.1) BS01 rna ? GO:0000027 ... P60491 22422985
    38 4v8q:AV (3.1) BS01 rna ? GO:0003723 ... P60492 22422985
    39 4v8q:AW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 22422985
    40 4v8q:AX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 22422985
    41 4v8q:AY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 22422985
    42 4v8q:AZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 22422985
    43 4v8q:AZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 22422985
    44 4v8q:B2 (3.1) BS01 rna ? GO:0003723 ... Q8RR57 22422985
    45 4v8q:B2 (3.1) BS02 rna ? GO:0003723 ... Q8RR57 22422985
    46 4v8q:BB (3.1) BS01 rna ? GO:0003735 ... P80371 22422985
    47 4v8q:BC (3.1) BS01 rna ? GO:0003676 ... P80372 22422985
    48 4v8q:BD (3.1) BS01 rna ? GO:0003723 ... P80373 22422985
    49 4v8q:BD (3.1) BS02 ZN ? GO:0003723 ... P80373 22422985
    50 4v8q:BE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 22422985
    51 4v8q:BF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 22422985
    52 4v8q:BG (3.1) BS01 rna ? GO:0000028 ... P17291 22422985
    53 4v8q:BG (3.1) BS02 rna ? GO:0000028 ... P17291 22422985
    54 4v8q:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 22422985
    55 4v8q:BI (3.1) BS01 rna ? GO:0000049 ... P80374 22422985
    56 4v8q:BJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 22422985
    57 4v8q:BK (3.1) BS01 rna ? GO:0003735 ... P80376 22422985
    58 4v8q:BL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 22422985
    59 4v8q:BL (3.1) BS02 rna ? GO:0000049 ... Q5SHN3 22422985
    60 4v8q:BM (3.1) BS01 rna ? GO:0000049 ... P80377 22422985
    61 4v8q:BM (3.1) BS02 rna ? GO:0000049 ... P80377 22422985
    62 4v8q:BM (3.1) BS03 rna ? GO:0000049 ... P80377 22422985
    63 4v8q:BN (3.1) BS01 rna N/A GO:0003735 ... N/A 22422985
    64 4v8q:BN (3.1) BS02 ZN N/A GO:0003735 ... N/A 22422985
    65 4v8q:BO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 22422985
    66 4v8q:BO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 22422985
    67 4v8q:BP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 22422985
    68 4v8q:BQ (3.1) BS01 rna N/A GO:0003735 ... N/A 22422985
    69 4v8q:BR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 22422985
    70 4v8q:BS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 22422985
    71 4v8q:BT (3.1) BS01 rna ? GO:0003723 ... P80380 22422985
    72 4v8q:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHN6 22422985
    73 4v8q:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHN6 22422985
    74 4v8q:BZ (3.1) BS03 rna ? GO:0003723 ... Q5SHN6 22422985
    75 4v8q:BZ (3.1) BS04 KIR ? GO:0003723 ... Q5SHN6 22422985
    76 4v8q:BZ (3.1) BS05 GDP ? GO:0003723 ... Q5SHN6 22422985
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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