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BioLiP Library
Download all results in tab-seperated text for 135 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v87:A0 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    2 4v87:A1 (3.1) BS01 rna ? GO:0000027 ... P60491 22437501
    3 4v87:A2 (3.1) BS01 rna ? GO:0003723 ... P60492 22437501
    4 4v87:A3 (3.1) BS01 rna ? GO:0003735 ... P60493 22437501
    5 4v87:A3 (3.1) BS02 rna ? GO:0003735 ... P60493 22437501
    6 4v87:A4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    7 4v87:A5 (3.1) BS01 rna ? GO:0003735 ... P80339 22437501
    8 4v87:A6 (3.1) BS01 rna ? GO:0003735 ... P35871 22437501
    9 4v87:A7 (3.1) BS01 rna ? GO:0003735 ... P80340 22437501
    10 4v87:A8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    11 4v87:AD (3.1) BS01 rna ? GO:0002181 ... P60405 22437501
    12 4v87:AE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    13 4v87:AE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 22437501
    14 4v87:AF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    15 4v87:AF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 22437501
    16 4v87:AF (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 22437501
    17 4v87:AG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    18 4v87:AG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    19 4v87:AG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    20 4v87:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 22437501
    21 4v87:AK (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    22 4v87:AM (3.1) BS01 rna ? GO:0003729 ... P60488 22437501
    23 4v87:AN (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    24 4v87:AN (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    25 4v87:AO (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    26 4v87:AO (3.1) BS02 MG ? GO:0003735 ... Q5SHQ7 22437501
    27 4v87:AP (3.1) BS01 rna ? GO:0000049 ... P60489 22437501
    28 4v87:AP (3.1) BS02 rna ? GO:0000049 ... P60489 22437501
    29 4v87:AP (3.1) BS03 rna ? GO:0000049 ... P60489 22437501
    30 4v87:AQ (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    31 4v87:AQ (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    32 4v87:AR (3.1) BS01 rna ? GO:0003735 ... P60490 22437501
    33 4v87:AR (3.1) BS02 rna ? GO:0003735 ... P60490 22437501
    34 4v87:AS (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    35 4v87:AT (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    36 4v87:AU (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    37 4v87:AV (3.1) BS01 rna ? GO:0003735 ... Q5SHZ1 22437501
    38 4v87:AW (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    39 4v87:AX (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    40 4v87:AZ (3.1) BS01 rna ? GO:0003735 ... P60494 22437501
    41 4v87:AZ (3.1) BS02 rna ? GO:0003735 ... P60494 22437501
    42 4v87:BE (3.1) BS01 rna ? GO:0003735 ... P80371 22437501
    43 4v87:BF (3.1) BS01 rna ? GO:0003676 ... P80372 22437501
    44 4v87:BG (3.1) BS01 rna ? GO:0003723 ... P80373 22437501
    45 4v87:BG (3.1) BS02 ZN ? GO:0003723 ... P80373 22437501
    46 4v87:BH (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    47 4v87:BI (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    48 4v87:BJ (3.1) BS01 rna ? GO:0000028 ... P17291 22437501
    49 4v87:BJ (3.1) BS02 rna ? GO:0000028 ... P17291 22437501
    50 4v87:BK (3.1) BS01 rna N/A GO:0003735 ... N/A 22437501
    51 4v87:BL (3.1) BS01 rna ? GO:0000049 ... P80374 22437501
    52 4v87:BL (3.1) BS02 rna ? GO:0000049 ... P80374 22437501
    53 4v87:BM (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    54 4v87:BN (3.1) BS01 rna ? GO:0003735 ... P80376 22437501
    55 4v87:BN (3.1) BS02 MG ? GO:0003735 ... P80376 22437501
    56 4v87:BO (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    57 4v87:BO (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    58 4v87:BP (3.1) BS01 rna ? GO:0000049 ... P80377 22437501
    59 4v87:BQ (3.1) BS01 rna N/A GO:0003735 ... N/A 22437501
    60 4v87:BQ (3.1) BS02 ZN N/A GO:0003735 ... N/A 22437501
    61 4v87:BR (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    62 4v87:BR (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    63 4v87:BS (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    64 4v87:BT (3.1) BS01 rna N/A GO:0003735 ... N/A 22437501
    65 4v87:BU (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    66 4v87:BV (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    67 4v87:BW (3.1) BS01 rna ? GO:0003723 ... P80380 22437501
    68 4v87:CE (3.1) BS01 rna ? GO:0003735 ... P80371 22437501
    69 4v87:CF (3.1) BS01 rna ? GO:0003676 ... P80372 22437501
    70 4v87:CG (3.1) BS01 rna ? GO:0003723 ... P80373 22437501
    71 4v87:CG (3.1) BS02 MG ? GO:0003723 ... P80373 22437501
    72 4v87:CG (3.1) BS03 ZN ? GO:0003723 ... P80373 22437501
    73 4v87:CH (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    74 4v87:CI (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    75 4v87:CJ (3.1) BS01 rna ? GO:0000028 ... P17291 22437501
    76 4v87:CJ (3.1) BS02 rna ? GO:0000028 ... P17291 22437501
    77 4v87:CK (3.1) BS01 rna N/A GO:0003735 ... N/A 22437501
    78 4v87:CL (3.1) BS01 rna ? GO:0000049 ... P80374 22437501
    79 4v87:CL (3.1) BS02 rna ? GO:0000049 ... P80374 22437501
    80 4v87:CM (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    81 4v87:CN (3.1) BS01 rna ? GO:0003735 ... P80376 22437501
    82 4v87:CN (3.1) BS02 MG ? GO:0003735 ... P80376 22437501
    83 4v87:CO (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    84 4v87:CP (3.1) BS01 rna ? GO:0000049 ... P80377 22437501
    85 4v87:CP (3.1) BS02 rna ? GO:0000049 ... P80377 22437501
    86 4v87:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 22437501
    87 4v87:CQ (3.1) BS02 ZN N/A GO:0003735 ... N/A 22437501
    88 4v87:CR (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    89 4v87:CR (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    90 4v87:CS (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    91 4v87:CT (3.1) BS01 rna N/A GO:0003735 ... N/A 22437501
    92 4v87:CU (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    93 4v87:CV (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    94 4v87:CW (3.1) BS01 rna ? GO:0003723 ... P80380 22437501
    95 4v87:D0 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    96 4v87:D1 (3.1) BS01 rna ? GO:0000027 ... P60491 22437501
    97 4v87:D2 (3.1) BS01 rna ? GO:0003723 ... P60492 22437501
    98 4v87:D3 (3.1) BS01 rna ? GO:0003735 ... P60493 22437501
    99 4v87:D3 (3.1) BS02 rna ? GO:0003735 ... P60493 22437501
    100 4v87:D4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    101 4v87:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 22437501
    102 4v87:D6 (3.1) BS01 rna ? GO:0003735 ... P35871 22437501
    103 4v87:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 22437501
    104 4v87:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    105 4v87:DD (3.1) BS01 rna ? GO:0002181 ... P60405 22437501
    106 4v87:DD (3.1) BS02 rna ? GO:0002181 ... P60405 22437501
    107 4v87:DD (3.1) BS03 MG ? GO:0002181 ... P60405 22437501
    108 4v87:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    109 4v87:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    110 4v87:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    111 4v87:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    112 4v87:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 22437501
    113 4v87:DK (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    114 4v87:DK (3.1) BS02 rna ? GO:0003735 ... Q5SLQ1 22437501
    115 4v87:DM (3.1) BS01 rna ? GO:0003729 ... P60488 22437501
    116 4v87:DN (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    117 4v87:DN (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    118 4v87:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    119 4v87:DP (3.1) BS01 rna ? GO:0000049 ... P60489 22437501
    120 4v87:DP (3.1) BS02 rna ? GO:0000049 ... P60489 22437501
    121 4v87:DP (3.1) BS03 rna ? GO:0000049 ... P60489 22437501
    122 4v87:DP (3.1) BS04 rna ? GO:0000049 ... P60489 22437501
    123 4v87:DQ (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    124 4v87:DQ (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    125 4v87:DR (3.1) BS01 rna ? GO:0003735 ... P60490 22437501
    126 4v87:DR (3.1) BS02 rna ? GO:0003735 ... P60490 22437501
    127 4v87:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    128 4v87:DT (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    129 4v87:DU (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    130 4v87:DV (3.1) BS01 rna ? GO:0003735 ... Q5SHZ1 22437501
    131 4v87:DV (3.1) BS02 rna ? GO:0003735 ... Q5SHZ1 22437501
    132 4v87:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    133 4v87:DX (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    134 4v87:DX (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    135 4v87:DZ (3.1) BS01 rna ? GO:0003735 ... P60494 22437501
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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