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BioLiP
Download all results in tab-seperated text for 117 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v7w:AB (3.0) BS01 rna ? GO:0003735 ... P80371 20876130
    2 4v7w:AC (3.0) BS01 rna ? GO:0003676 ... P80372 20876130
    3 4v7w:AD (3.0) BS01 rna ? GO:0003723 ... P80373 20876130
    4 4v7w:AD (3.0) BS02 ZN ? GO:0003723 ... P80373 20876130
    5 4v7w:AE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 20876130
    6 4v7w:AF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20876130
    7 4v7w:AG (3.0) BS01 rna ? GO:0000028 ... P17291 20876130
    8 4v7w:AH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    9 4v7w:AI (3.0) BS01 rna ? GO:0000049 ... P80374 20876130
    10 4v7w:AJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20876130
    11 4v7w:AK (3.0) BS01 rna ? GO:0003735 ... P80376 20876130
    12 4v7w:AL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20876130
    13 4v7w:AL (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 20876130
    14 4v7w:AM (3.0) BS01 rna ? GO:0000049 ... P80377 20876130
    15 4v7w:AN (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    16 4v7w:AO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 20876130
    17 4v7w:AO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 20876130
    18 4v7w:AP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20876130
    19 4v7w:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    20 4v7w:AR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20876130
    21 4v7w:AS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20876130
    22 4v7w:AT (3.0) BS01 rna ? GO:0003723 ... P80380 20876130
    23 4v7w:B0 (3.0) BS01 rna ? GO:0003735 ... P60493 20876130
    24 4v7w:B0 (3.0) BS02 rna ? GO:0003735 ... P60493 20876130
    25 4v7w:B1 (3.0) BS01 rna ? GO:0003735 ... P60494 20876130
    26 4v7w:B2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 20876130
    27 4v7w:B3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 20876130
    28 4v7w:B4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 20876130
    29 4v7w:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 20876130
    30 4v7w:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 20876130
    31 4v7w:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 20876130
    32 4v7w:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20876130
    33 4v7w:BD (3.0) BS01 rna ? GO:0002181 ... P60405 20876130
    34 4v7w:BD (3.0) BS02 rna ? GO:0002181 ... P60405 20876130
    35 4v7w:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20876130
    36 4v7w:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20876130
    37 4v7w:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20876130
    38 4v7w:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20876130
    39 4v7w:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    40 4v7w:BI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 20876130
    41 4v7w:BN (3.0) BS01 rna ? GO:0003729 ... P60488 20876130
    42 4v7w:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20876130
    43 4v7w:BO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20876130
    44 4v7w:BP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20876130
    45 4v7w:BQ (3.0) BS01 rna ? GO:0000049 ... P60489 20876130
    46 4v7w:BQ (3.0) BS02 rna ? GO:0000049 ... P60489 20876130
    47 4v7w:BQ (3.0) BS03 MG ? GO:0000049 ... P60489 20876130
    48 4v7w:BR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20876130
    49 4v7w:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 20876130
    50 4v7w:BS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 20876130
    51 4v7w:BT (3.0) BS01 rna ? GO:0003735 ... P60490 20876130
    52 4v7w:BT (3.0) BS02 rna ? GO:0003735 ... P60490 20876130
    53 4v7w:BU (3.0) BS01 rna ? GO:0000027 ... P60491 20876130
    54 4v7w:BV (3.0) BS01 rna ? GO:0003723 ... P60492 20876130
    55 4v7w:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20876130
    56 4v7w:BX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 20876130
    57 4v7w:BY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 20876130
    58 4v7w:BZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20876130
    59 4v7w:BZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20876130
    60 4v7w:CB (3.0) BS01 rna ? GO:0003735 ... P80371 20876130
    61 4v7w:CC (3.0) BS01 rna ? GO:0003676 ... P80372 20876130
    62 4v7w:CD (3.0) BS01 rna ? GO:0003723 ... P80373 20876130
    63 4v7w:CE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 20876130
    64 4v7w:CF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20876130
    65 4v7w:CG (3.0) BS01 rna ? GO:0000028 ... P17291 20876130
    66 4v7w:CH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    67 4v7w:CI (3.0) BS01 rna ? GO:0000049 ... P80374 20876130
    68 4v7w:CJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20876130
    69 4v7w:CK (3.0) BS01 rna ? GO:0003735 ... P80376 20876130
    70 4v7w:CL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20876130
    71 4v7w:CL (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 20876130
    72 4v7w:CM (3.0) BS01 rna ? GO:0000049 ... P80377 20876130
    73 4v7w:CN (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    74 4v7w:CO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 20876130
    75 4v7w:CO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 20876130
    76 4v7w:CP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20876130
    77 4v7w:CQ (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    78 4v7w:CR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20876130
    79 4v7w:CS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20876130
    80 4v7w:CT (3.0) BS01 rna ? GO:0003723 ... P80380 20876130
    81 4v7w:D0 (3.0) BS01 rna ? GO:0003735 ... P60493 20876130
    82 4v7w:D0 (3.0) BS02 rna ? GO:0003735 ... P60493 20876130
    83 4v7w:D1 (3.0) BS01 rna ? GO:0003735 ... P60494 20876130
    84 4v7w:D2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 20876130
    85 4v7w:D3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 20876130
    86 4v7w:D4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 20876130
    87 4v7w:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 20876130
    88 4v7w:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 20876130
    89 4v7w:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 20876130
    90 4v7w:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20876130
    91 4v7w:DD (3.0) BS01 rna ? GO:0002181 ... P60405 20876130
    92 4v7w:DD (3.0) BS02 MG ? GO:0002181 ... P60405 20876130
    93 4v7w:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20876130
    94 4v7w:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20876130
    95 4v7w:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20876130
    96 4v7w:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20876130
    97 4v7w:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    98 4v7w:DI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 20876130
    99 4v7w:DN (3.0) BS01 rna ? GO:0003729 ... P60488 20876130
    100 4v7w:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20876130
    101 4v7w:DO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20876130
    102 4v7w:DP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20876130
    103 4v7w:DQ (3.0) BS01 rna ? GO:0000049 ... P60489 20876130
    104 4v7w:DQ (3.0) BS02 rna ? GO:0000049 ... P60489 20876130
    105 4v7w:DR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20876130
    106 4v7w:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 20876130
    107 4v7w:DS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 20876130
    108 4v7w:DT (3.0) BS01 rna ? GO:0003735 ... P60490 20876130
    109 4v7w:DT (3.0) BS02 rna ? GO:0003735 ... P60490 20876130
    110 4v7w:DU (3.0) BS01 rna ? GO:0000027 ... P60491 20876130
    111 4v7w:DV (3.0) BS01 rna ? GO:0003723 ... P60492 20876130
    112 4v7w:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20876130
    113 4v7w:DX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 20876130
    114 4v7w:DX (3.0) BS02 MG ? GO:0000027 ... Q5SHP0 20876130
    115 4v7w:DY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 20876130
    116 4v7w:DZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20876130
    117 4v7w:DZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20876130
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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