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BioLiP
Download all results in tab-seperated text for 98 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v7e:BA (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    2 4v7e:BB (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    3 4v7e:BB (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    4 4v7e:BC (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    5 4v7e:BD (5.5) BS01 rna ? GO:0003723 ... Q8L804 24499919
    6 4v7e:BE (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    7 4v7e:BF (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    8 4v7e:BG (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    9 4v7e:BH (5.5) BS01 rna ? GO:0003735 ... Q5I7K2 24499919
    10 4v7e:BI (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    11 4v7e:BJ (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    12 4v7e:BK (5.5) BS01 rna N/A N/A N/A 24499919
    13 4v7e:BL (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    14 4v7e:BL (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    15 4v7e:BM (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    16 4v7e:BN (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    17 4v7e:BN (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    18 4v7e:BO (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    19 4v7e:BP (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    20 4v7e:BQ (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    21 4v7e:BR (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    22 4v7e:BS (5.5) BS01 rna ? GO:0003676 ... Q8L806 24499919
    23 4v7e:BT (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    24 4v7e:BU (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    25 4v7e:BW (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    26 4v7e:BX (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    27 4v7e:BX (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    28 4v7e:BY (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    29 4v7e:BZ (5.5) BS01 rna N/A N/A N/A 24499919
    30 4v7e:Ba (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    31 4v7e:Bb (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    32 4v7e:Bc (5.5) BS01 rna ? GO:0003735 ... Q7X9K4 24499919
    33 4v7e:Bd (5.5) BS01 rna ? GO:0002181 ... Q5I7K3 24499919
    34 4v7e:Be (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    35 4v7e:Bf (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    36 4v7e:Bg (5.5) BS01 rna ? GO:0007165 ... Q8LNY6 24499919
    37 4v7e:CA (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    38 4v7e:CA (5.5) BS02 rna N/A GO:0003723 ... N/A 24499919
    39 4v7e:CB (5.5) BS01 rna ? GO:0003723 ... Q7X744 24499919
    40 4v7e:CC (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    41 4v7e:CC (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    42 4v7e:CD (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    43 4v7e:CD (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    44 4v7e:CE (5.5) BS01 rna ? GO:0003735 ... Q5I7L4 24499919
    45 4v7e:CF (5.5) BS01 rna ? GO:0000463 ... Q5I7K6 24499919
    46 4v7e:CF (5.5) BS02 rna ? GO:0000463 ... Q5I7K6 24499919
    47 4v7e:CG (5.5) BS01 rna N/A GO:0042254 ... N/A 24499919
    48 4v7e:CG (5.5) BS02 rna N/A GO:0042254 ... N/A 24499919
    49 4v7e:CH (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    50 4v7e:CI (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    51 4v7e:CJ (5.5) BS01 rna ? GO:0003723 ... Q5I7L2 24499919
    52 4v7e:CJ (5.5) BS02 rna ? GO:0003723 ... Q5I7L2 24499919
    53 4v7e:CK (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    54 4v7e:CL (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    55 4v7e:CM (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    56 4v7e:CN (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    57 4v7e:CO (5.5) BS01 rna ? GO:0003729 ... Q5I7L1 24499919
    58 4v7e:CP (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    59 4v7e:CP (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    60 4v7e:CQ (5.5) BS01 rna ? GO:0003729 ... Q5I7L0 24499919
    61 4v7e:CR (5.5) BS01 rna ? GO:0003723 ... Q7XY20 24499919
    62 4v7e:CR (5.5) BS02 rna ? GO:0003723 ... Q7XY20 24499919
    63 4v7e:CS (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    64 4v7e:CS (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    65 4v7e:CT (5.5) BS01 rna ? GO:0003735 ... F4YWL9 24499919
    66 4v7e:CT (5.5) BS02 rna ? GO:0003735 ... F4YWL9 24499919
    67 4v7e:CU (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    68 4v7e:CV (5.5) BS01 rna ? GO:0003735 ... Q5I7K4 24499919
    69 4v7e:CV (5.5) BS02 rna ? GO:0003735 ... Q5I7K4 24499919
    70 4v7e:CW (5.5) BS01 rna N/A N/A N/A 24499919
    71 4v7e:CX (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    72 4v7e:CX (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    73 4v7e:CY (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    74 4v7e:CY (5.5) BS02 rna N/A GO:0003723 ... N/A 24499919
    75 4v7e:CZ (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    76 4v7e:Ca (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    77 4v7e:Cb (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    78 4v7e:Cc (5.5) BS01 rna ? GO:0003723 ... Q5I7K9 24499919
    79 4v7e:Cc (5.5) BS02 rna ? GO:0003723 ... Q5I7K9 24499919
    80 4v7e:Cd (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    81 4v7e:Ce (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    82 4v7e:Cf (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    83 4v7e:Cg (5.5) BS01 rna ? GO:0003735 ... Q5I7K8 24499919
    84 4v7e:Ch (5.5) BS01 rna ? GO:0000463 ... Q8L805 24499919
    85 4v7e:Ch (5.5) BS02 rna ? GO:0000463 ... Q8L805 24499919
    86 4v7e:Ci (5.5) BS01 rna ? GO:0002181 ... Q5I7L5 24499919
    87 4v7e:Cj (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    88 4v7e:Cj (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    89 4v7e:Ck (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    90 4v7e:Cl (5.5) BS01 rna ? GO:0003735 ... Q5I7K7 24499919
    91 4v7e:Cl (5.5) BS02 rna ? GO:0003735 ... Q5I7K7 24499919
    92 4v7e:Cm (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    93 4v7e:Co (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    94 4v7e:Cp (5.5) BS01 rna ? GO:0003735 ... D8L9P6 24499919
    95 4v7e:Cp (5.5) BS02 rna ? GO:0003735 ... D8L9P6 24499919
    96 4v7e:Cq (5.5) BS01 rna N/A GO:0042254 ... N/A 24499919
    97 4v7e:Cr (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    98 4v7e:Cz (5.5) BS01 rna ? GO:0003723 ... Q5I7L3 24499919
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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