Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v72:AB (13.0) BS01 rna ? GO:0000028 ... P0A7V0 24186064
    2 4v72:AC (13.0) BS01 rna ? GO:0003676 ... P0A7V3 24186064
    3 4v72:AC (13.0) BS02 rna ? GO:0003676 ... P0A7V3 24186064
    4 4v72:AD (13.0) BS01 rna ? GO:0000028 ... P0A7V8 24186064
    5 4v72:AE (13.0) BS01 rna ? GO:0000028 ... P0A7W1 24186064
    6 4v72:AE (13.0) BS02 rna ? GO:0000028 ... P0A7W1 24186064
    7 4v72:AF (13.0) BS01 rna ? GO:0003735 ... P02358 24186064
    8 4v72:AG (13.0) BS01 rna ? GO:0003723 ... P02359 24186064
    9 4v72:AG (13.0) BS02 rna ? GO:0003723 ... P02359 24186064
    10 4v72:AH (13.0) BS01 rna ? GO:0000028 ... P0A7W7 24186064
    11 4v72:AI (13.0) BS01 rna ? GO:0000049 ... P0A7X3 24186064
    12 4v72:AI (13.0) BS02 rna ? GO:0000049 ... P0A7X3 24186064
    13 4v72:AJ (13.0) BS01 rna ? GO:0000049 ... P0A7R5 24186064
    14 4v72:AK (13.0) BS01 rna ? GO:0002181 ... P0A7R9 24186064
    15 4v72:AL (13.0) BS01 rna ? GO:0000049 ... P0A7S3 24186064
    16 4v72:AM (13.0) BS01 rna ? GO:0000049 ... P0A7S9 24186064
    17 4v72:AN (13.0) BS01 rna ? GO:0000028 ... P0AG59 24186064
    18 4v72:AO (13.0) BS01 rna ? GO:0000028 ... P0ADZ4 24186064
    19 4v72:AO (13.0) BS02 rna ? GO:0000028 ... P0ADZ4 24186064
    20 4v72:AP (13.0) BS01 rna ? GO:0000028 ... P0A7T3 24186064
    21 4v72:AQ (13.0) BS01 rna ? GO:0000028 ... P0AG63 24186064
    22 4v72:AR (13.0) BS01 rna ? GO:0003735 ... P0A7T7 24186064
    23 4v72:AS (13.0) BS01 rna ? GO:0003723 ... P0A7U3 24186064
    24 4v72:AT (13.0) BS01 rna ? GO:0000028 ... P0A7U7 24186064
    25 4v72:AU (13.0) BS01 rna ? GO:0003735 ... P68679 24186064
    26 4v72:B0 (13.0) BS01 rna ? GO:0000027 ... P0A7N4 24186064
    27 4v72:B1 (13.0) BS01 rna ? GO:0000027 ... P0A7N9 24186064
    28 4v72:B1 (13.0) BS02 rna ? GO:0000027 ... P0A7N9 24186064
    29 4v72:B2 (13.0) BS01 rna ? GO:0002181 ... P0A7P5 24186064
    30 4v72:B3 (13.0) BS01 rna ? GO:0002181 ... P0A7Q1 24186064
    31 4v72:B4 (13.0) BS01 rna ? GO:0002181 ... P0A7Q6 24186064
    32 4v72:B5 (13.0) BS01 rna ? GO:0000027 ... P0A7L0 24186064
    33 4v72:B5 (13.0) BS02 rna ? GO:0000027 ... P0A7L0 24186064
    34 4v72:BC (13.0) BS01 rna ? GO:0000027 ... P60422 24186064
    35 4v72:BC (13.0) BS02 rna ? GO:0000027 ... P60422 24186064
    36 4v72:BD (13.0) BS01 rna ? GO:0000027 ... P60438 24186064
    37 4v72:BE (13.0) BS01 rna ? GO:0001070 ... P60723 24186064
    38 4v72:BF (13.0) BS01 rna ? GO:0000027 ... P62399 24186064
    39 4v72:BF (13.0) BS02 rna ? GO:0000027 ... P62399 24186064
    40 4v72:BG (13.0) BS01 rna ? GO:0000027 ... P0AG55 24186064
    41 4v72:BI (13.0) BS01 rna ? GO:0000027 ... P0A7J7 24186064
    42 4v72:BJ (13.0) BS01 rna ? GO:0002181 ... P0AA10 24186064
    43 4v72:BK (13.0) BS01 rna ? GO:0002181 ... P0ADY3 24186064
    44 4v72:BK (13.0) BS02 rna ? GO:0002181 ... P0ADY3 24186064
    45 4v72:BL (13.0) BS01 rna ? GO:0002181 ... P02413 24186064
    46 4v72:BM (13.0) BS01 rna ? GO:0000027 ... P0ADY7 24186064
    47 4v72:BM (13.0) BS02 rna ? GO:0000027 ... P0ADY7 24186064
    48 4v72:BM (13.0) BS03 rna ? GO:0000027 ... P0ADY7 24186064
    49 4v72:BN (13.0) BS01 rna ? GO:0000027 ... P0AG44 24186064
    50 4v72:BO (13.0) BS01 rna ? GO:0002181 ... P0C018 24186064
    51 4v72:BO (13.0) BS02 rna ? GO:0002181 ... P0C018 24186064
    52 4v72:BP (13.0) BS01 rna ? GO:0000027 ... P0A7K6 24186064
    53 4v72:BP (13.0) BS02 rna ? GO:0000027 ... P0A7K6 24186064
    54 4v72:BQ (13.0) BS01 rna ? GO:0000027 ... P0A7L3 24186064
    55 4v72:BR (13.0) BS01 rna ? GO:0002181 ... P0AG48 24186064
    56 4v72:BS (13.0) BS01 rna ? GO:0002181 ... P61175 24186064
    57 4v72:BT (13.0) BS01 rna ? GO:0000027 ... P0ADZ0 24186064
    58 4v72:BU (13.0) BS01 rna ? GO:0000027 ... P60624 24186064
    59 4v72:BV (13.0) BS01 rna ? GO:0000027 ... P68919 24186064
    60 4v72:BW (13.0) BS01 rna ? GO:0000027 ... P0A7L8 24186064
    61 4v72:BW (13.0) BS02 rna ? GO:0000027 ... P0A7L8 24186064
    62 4v72:BX (13.0) BS01 rna ? GO:0000027 ... P0A7M2 24186064
    63 4v72:BY (13.0) BS01 rna ? GO:0000027 ... P0A7M6 24186064
    64 4v72:BZ (13.0) BS01 rna ? GO:0000027 ... P0AG51 24186064
    65 4v72:BZ (13.0) BS02 rna ? GO:0000027 ... P0AG51 24186064
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417