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BioLiP
Download all results in tab-seperated text for 105 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v6x:AA (5.0) BS01 rna ? GO:0000028 ... P08865 23636399
    2 4v6x:AB (5.0) BS01 rna ? GO:0002181 ... P61247 23636399
    3 4v6x:AB (5.0) BS02 rna ? GO:0002181 ... P61247 23636399
    4 4v6x:AC (5.0) BS01 rna ? GO:0002181 ... P15880 23636399
    5 4v6x:AD (5.0) BS01 rna 4.2.99.18 GO:0000977 ... P23396 23636399
    6 4v6x:AE (5.0) BS01 rna ? GO:0002181 ... P62701 23636399
    7 4v6x:AF (5.0) BS01 rna ? GO:0000028 ... P46782 23636399
    8 4v6x:AG (5.0) BS01 rna ? GO:0000082 ... P62753 23636399
    9 4v6x:AH (5.0) BS01 rna ? GO:0001843 ... P62081 23636399
    10 4v6x:AI (5.0) BS01 rna ? GO:0000462 ... P62241 23636399
    11 4v6x:AI (5.0) BS02 rna ? GO:0000462 ... P62241 23636399
    12 4v6x:AJ (5.0) BS01 rna ? GO:0002181 ... P46781 23636399
    13 4v6x:AK (5.0) BS01 rna ? GO:0002181 ... P46783 23636399
    14 4v6x:AL (5.0) BS01 rna ? GO:0002181 ... P62280 23636399
    15 4v6x:AM (5.0) BS01 rna ? GO:0002181 ... P25398 23636399
    16 4v6x:AN (5.0) BS01 rna ? GO:0002181 ... P62277 23636399
    17 4v6x:AN (5.0) BS02 rna ? GO:0002181 ... P62277 23636399
    18 4v6x:AO (5.0) BS01 rna ? GO:0000028 ... P62263 23636399
    19 4v6x:AP (5.0) BS01 rna ? GO:0000028 ... P62841 23636399
    20 4v6x:AQ (5.0) BS01 rna ? GO:0000462 ... P62249 23636399
    21 4v6x:AR (5.0) BS01 rna ? GO:0002181 ... P08708 23636399
    22 4v6x:AS (5.0) BS01 rna ? GO:0002181 ... P62269 23636399
    23 4v6x:AT (5.0) BS01 rna ? GO:0000028 ... P39019 23636399
    24 4v6x:AU (5.0) BS01 rna ? GO:0002181 ... P60866 23636399
    25 4v6x:AW (5.0) BS01 rna ? GO:0002181 ... P62244 23636399
    26 4v6x:AX (5.0) BS01 rna ? GO:0002181 ... P62266 23636399
    27 4v6x:AY (5.0) BS01 rna ? GO:0002181 ... P62847 23636399
    28 4v6x:AZ (5.0) BS01 rna ? GO:0002181 ... P62851 23636399
    29 4v6x:Aa (5.0) BS01 rna ? GO:0002181 ... P62854 23636399
    30 4v6x:Ab (5.0) BS01 rna ? GO:0000028 ... P42677 23636399
    31 4v6x:Ac (5.0) BS01 rna ? GO:0000028 ... P62857 23636399
    32 4v6x:Ad (5.0) BS01 rna ? GO:0002181 ... P62273 23636399
    33 4v6x:Ae (5.0) BS01 rna ? GO:0003735 ... P62861 23636399
    34 4v6x:Af (5.0) BS01 rna ? GO:0003735 ... P62979 23636399
    35 4v6x:Ag (5.0) BS01 rna ? GO:0001891 ... P63244 23636399
    36 4v6x:Ah (5.0) BS01 rna ? GO:0003723 ... Q8NC51 23636399
    37 4v6x:Ah (5.0) BS02 rna ? GO:0003723 ... Q8NC51 23636399
    38 4v6x:Az (5.0) BS01 rna 3.6.5.- GO:0002244 ... P13639 23636399
    39 4v6x:Az (5.0) BS02 rna 3.6.5.- GO:0002244 ... P13639 23636399
    40 4v6x:CA (5.0) BS01 rna ? GO:0002181 ... P62917 23636399
    41 4v6x:CA (5.0) BS02 rna ? GO:0002181 ... P62917 23636399
    42 4v6x:CB (5.0) BS01 rna ? GO:0002181 ... P39023 23636399
    43 4v6x:CC (5.0) BS01 rna ? GO:0002181 ... P36578 23636399
    44 4v6x:CC (5.0) BS02 rna ? GO:0002181 ... P36578 23636399
    45 4v6x:CD (5.0) BS01 rna ? GO:0000027 ... P46777 23636399
    46 4v6x:CD (5.0) BS02 rna ? GO:0000027 ... P46777 23636399
    47 4v6x:CE (5.0) BS01 rna ? GO:0000027 ... Q02878 23636399
    48 4v6x:CF (5.0) BS01 rna ? GO:0000463 ... P18124 23636399
    49 4v6x:CF (5.0) BS02 rna ? GO:0000463 ... P18124 23636399
    50 4v6x:CG (5.0) BS01 rna ? GO:0000470 ... P62424 23636399
    51 4v6x:CG (5.0) BS02 rna ? GO:0000470 ... P62424 23636399
    52 4v6x:CH (5.0) BS01 rna ? GO:0002181 ... P32969 23636399
    53 4v6x:CI (5.0) BS01 rna ? GO:0000027 ... Q96L21 23636399
    54 4v6x:CI (5.0) BS02 rna ? GO:0000027 ... Q96L21 23636399
    55 4v6x:CJ (5.0) BS01 rna ? GO:0000027 ... P62913 23636399
    56 4v6x:CJ (5.0) BS02 rna ? GO:0000027 ... P62913 23636399
    57 4v6x:CK (5.0) BS01 rna ? GO:0002181 ... P30050 23636399
    58 4v6x:CL (5.0) BS01 rna ? GO:0001824 ... P26373 23636399
    59 4v6x:CL (5.0) BS02 rna ? GO:0001824 ... P26373 23636399
    60 4v6x:CM (5.0) BS01 rna ? GO:0002181 ... P50914 23636399
    61 4v6x:CN (5.0) BS01 rna ? GO:0002181 ... P61313 23636399
    62 4v6x:CN (5.0) BS02 rna ? GO:0002181 ... P61313 23636399
    63 4v6x:CO (5.0) BS01 rna ? GO:0002181 ... P40429 23636399
    64 4v6x:CP (5.0) BS01 rna ? GO:0002181 ... P18621 23636399
    65 4v6x:CP (5.0) BS02 rna ? GO:0002181 ... P18621 23636399
    66 4v6x:CQ (5.0) BS01 rna ? GO:0002181 ... Q07020 23636399
    67 4v6x:CR (5.0) BS01 rna ? GO:0002181 ... P84098 23636399
    68 4v6x:CR (5.0) BS02 rna ? GO:0002181 ... P84098 23636399
    69 4v6x:CS (5.0) BS01 rna ? GO:0002181 ... Q02543 23636399
    70 4v6x:CS (5.0) BS02 rna ? GO:0002181 ... Q02543 23636399
    71 4v6x:CT (5.0) BS01 rna ? GO:0002181 ... P46778 23636399
    72 4v6x:CT (5.0) BS02 rna ? GO:0002181 ... P46778 23636399
    73 4v6x:CU (5.0) BS01 rna ? GO:0002181 ... P35268 23636399
    74 4v6x:CV (5.0) BS01 rna ? GO:0000122 ... P62829 23636399
    75 4v6x:CV (5.0) BS02 rna ? GO:0000122 ... P62829 23636399
    76 4v6x:CW (5.0) BS01 rna ? GO:0000027 ... P83731 23636399
    77 4v6x:CW (5.0) BS02 rna ? GO:0000027 ... P83731 23636399
    78 4v6x:CX (5.0) BS01 rna ? GO:0000027 ... P62750 23636399
    79 4v6x:CX (5.0) BS02 rna ? GO:0000027 ... P62750 23636399
    80 4v6x:CY (5.0) BS01 rna ? GO:0002181 ... P61254 23636399
    81 4v6x:CY (5.0) BS02 rna ? GO:0002181 ... P61254 23636399
    82 4v6x:CZ (5.0) BS01 rna ? GO:0002181 ... P61353 23636399
    83 4v6x:Ca (5.0) BS01 rna ? GO:0002181 ... P46776 23636399
    84 4v6x:Cb (5.0) BS01 rna ? GO:0002181 ... P47914 23636399
    85 4v6x:Cc (5.0) BS01 rna ? GO:0002181 ... P62888 23636399
    86 4v6x:Cd (5.0) BS01 rna ? GO:0002181 ... P62899 23636399
    87 4v6x:Ce (5.0) BS01 rna ? GO:0002181 ... P62910 23636399
    88 4v6x:Cf (5.0) BS01 rna ? GO:0000049 ... P18077 23636399
    89 4v6x:Cg (5.0) BS01 rna ? GO:0002181 ... P49207 23636399
    90 4v6x:Ch (5.0) BS01 rna ? GO:0000463 ... P42766 23636399
    91 4v6x:Ch (5.0) BS02 rna ? GO:0000463 ... P42766 23636399
    92 4v6x:Ci (5.0) BS01 rna ? GO:0002181 ... Q9Y3U8 23636399
    93 4v6x:Cj (5.0) BS01 rna ? GO:0002181 ... P61927 23636399
    94 4v6x:Cj (5.0) BS02 rna ? GO:0002181 ... P61927 23636399
    95 4v6x:Ck (5.0) BS01 rna ? GO:0001501 ... P63173 23636399
    96 4v6x:Cl (5.0) BS01 rna ? GO:0002181 ... P62891 23636399
    97 4v6x:Cl (5.0) BS02 rna ? GO:0002181 ... P62891 23636399
    98 4v6x:Cm (5.0) BS01 rna ? GO:0003735 ... P62987 23636399
    99 4v6x:Co (5.0) BS01 rna ? GO:0002181 ... P83881 23636399
    100 4v6x:Co (5.0) BS02 rna ? GO:0002181 ... P83881 23636399
    101 4v6x:Cp (5.0) BS01 rna ? GO:0002181 ... P61513 23636399
    102 4v6x:Cq (5.0) BS01 rna ? GO:0000027 ... P05388 23636399
    103 4v6x:Cr (5.0) BS01 rna ? GO:0002181 ... P46779 23636399
    104 4v6x:Cz (5.0) BS01 rna ? GO:0002181 ... P62906 23636399
    105 4v6x:Cz (5.0) BS02 rna ? GO:0002181 ... P62906 23636399
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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