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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v6t:AB (8.3) BS01 rna ? GO:0000028 ... P0A7V0 22622583
    2 4v6t:AB (8.3) BS02 rna ? GO:0000028 ... P0A7V0 22622583
    3 4v6t:AC (8.3) BS01 rna ? GO:0003676 ... P0A7V3 22622583
    4 4v6t:AC (8.3) BS02 rna ? GO:0003676 ... P0A7V3 22622583
    5 4v6t:AD (8.3) BS01 rna ? GO:0000028 ... P0A7V8 22622583
    6 4v6t:AE (8.3) BS01 rna ? GO:0000028 ... P0A7W1 22622583
    7 4v6t:AF (8.3) BS01 rna ? GO:0003735 ... P02358 22622583
    8 4v6t:AG (8.3) BS01 rna ? GO:0003723 ... P02359 22622583
    9 4v6t:AH (8.3) BS01 rna ? GO:0000028 ... P0A7W7 22622583
    10 4v6t:AI (8.3) BS01 rna ? GO:0000049 ... P0A7X3 22622583
    11 4v6t:AI (8.3) BS02 rna ? GO:0000049 ... P0A7X3 22622583
    12 4v6t:AJ (8.3) BS01 rna ? GO:0000049 ... P0A7R5 22622583
    13 4v6t:AK (8.3) BS01 rna ? GO:0002181 ... P0A7R9 22622583
    14 4v6t:AL (8.3) BS01 rna ? GO:0000049 ... P0A7S3 22622583
    15 4v6t:AM (8.3) BS01 rna ? GO:0000049 ... P0A7S9 22622583
    16 4v6t:AN (8.3) BS01 rna ? GO:0000028 ... P0AG59 22622583
    17 4v6t:AO (8.3) BS01 rna ? GO:0000028 ... P0ADZ4 22622583
    18 4v6t:AO (8.3) BS02 rna ? GO:0000028 ... P0ADZ4 22622583
    19 4v6t:AP (8.3) BS01 rna ? GO:0000028 ... P0A7T3 22622583
    20 4v6t:AQ (8.3) BS01 rna ? GO:0000028 ... P0AG63 22622583
    21 4v6t:AR (8.3) BS01 rna ? GO:0003735 ... P0A7T7 22622583
    22 4v6t:AS (8.3) BS01 rna ? GO:0003723 ... P0A7U3 22622583
    23 4v6t:AT (8.3) BS01 rna ? GO:0000028 ... P0A7U7 22622583
    24 4v6t:AU (8.3) BS01 rna ? GO:0003735 ... P68679 22622583
    25 4v6t:AW (8.3) BS01 rna N/A GO:0003723 ... N/A 22622583
    26 4v6t:AW (8.3) BS02 rna N/A GO:0003723 ... N/A 22622583
    27 4v6t:AW (8.3) BS03 rna N/A GO:0003723 ... N/A 22622583
    28 4v6t:AY (8.3) BS01 rna N/A GO:0003746 ... N/A 22622583
    29 4v6t:AY (8.3) BS02 rna N/A GO:0003746 ... N/A 22622583
    30 4v6t:B0 (8.3) BS01 rna ? GO:0000027 ... P0A7N4 22622583
    31 4v6t:B1 (8.3) BS01 rna ? GO:0000027 ... P0A7N9 22622583
    32 4v6t:B2 (8.3) BS01 rna ? GO:0002181 ... P0A7P5 22622583
    33 4v6t:B3 (8.3) BS01 rna ? GO:0002181 ... P0A7Q1 22622583
    34 4v6t:B4 (8.3) BS01 rna ? GO:0002181 ... P0A7Q6 22622583
    35 4v6t:BC (8.3) BS01 rna ? GO:0000027 ... P60422 22622583
    36 4v6t:BD (8.3) BS01 rna ? GO:0000027 ... P60438 22622583
    37 4v6t:BE (8.3) BS01 rna ? GO:0001070 ... P60723 22622583
    38 4v6t:BF (8.3) BS01 rna ? GO:0000027 ... P62399 22622583
    39 4v6t:BF (8.3) BS02 rna ? GO:0000027 ... P62399 22622583
    40 4v6t:BF (8.3) BS03 rna ? GO:0000027 ... P62399 22622583
    41 4v6t:BG (8.3) BS01 rna ? GO:0000027 ... P0AG55 22622583
    42 4v6t:BH (8.3) BS01 rna ? GO:0002181 ... P0A7R1 22622583
    43 4v6t:BI (8.3) BS01 rna ? GO:0000027 ... P0A7J7 22622583
    44 4v6t:BJ (8.3) BS01 rna ? GO:0002181 ... P0AA10 22622583
    45 4v6t:BK (8.3) BS01 rna ? GO:0002181 ... P0ADY3 22622583
    46 4v6t:BL (8.3) BS01 rna ? GO:0002181 ... P02413 22622583
    47 4v6t:BM (8.3) BS01 rna ? GO:0000027 ... P0ADY7 22622583
    48 4v6t:BM (8.3) BS02 rna ? GO:0000027 ... P0ADY7 22622583
    49 4v6t:BN (8.3) BS01 rna ? GO:0000027 ... P0AG44 22622583
    50 4v6t:BO (8.3) BS01 rna ? GO:0002181 ... P0C018 22622583
    51 4v6t:BO (8.3) BS02 rna ? GO:0002181 ... P0C018 22622583
    52 4v6t:BP (8.3) BS01 rna ? GO:0000027 ... P0A7K6 22622583
    53 4v6t:BP (8.3) BS02 rna ? GO:0000027 ... P0A7K6 22622583
    54 4v6t:BQ (8.3) BS01 rna ? GO:0000027 ... P0A7L3 22622583
    55 4v6t:BR (8.3) BS01 rna ? GO:0002181 ... P0AG48 22622583
    56 4v6t:BS (8.3) BS01 rna ? GO:0002181 ... P61175 22622583
    57 4v6t:BT (8.3) BS01 rna ? GO:0000027 ... P0ADZ0 22622583
    58 4v6t:BU (8.3) BS01 rna ? GO:0000027 ... P60624 22622583
    59 4v6t:BV (8.3) BS01 rna ? GO:0000027 ... P68919 22622583
    60 4v6t:BW (8.3) BS01 rna ? GO:0003735 ... P0A7L8 22622583
    61 4v6t:BW (8.3) BS02 rna ? GO:0003735 ... P0A7L8 22622583
    62 4v6t:BX (8.3) BS01 rna ? GO:0000027 ... P0A7M2 22622583
    63 4v6t:BY (8.3) BS01 rna ? GO:0000027 ... P0A7M6 22622583
    64 4v6t:BZ (8.3) BS01 rna ? GO:0000027 ... P0AG51 22622583
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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