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BioLiP
Download all results in tab-seperated text for 91 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v6i:AA (8.8) BS01 rna ? GO:0000028 ... P32905 20980660
    2 4v6i:AB (8.8) BS01 rna ? GO:0000054 ... P05750 20980660
    3 4v6i:AC (8.8) BS01 rna ? GO:0000462 ... O13516 20980660
    4 4v6i:AD (8.8) BS01 rna N/A GO:0003723 ... N/A 20980660
    5 4v6i:AE (8.8) BS01 rna ? GO:0000054 ... P25443 20980660
    6 4v6i:AF (8.8) BS01 rna ? GO:0000028 ... P26783 20980660
    7 4v6i:AG (8.8) BS01 rna N/A N/A N/A 20980660
    8 4v6i:AH (8.8) BS01 rna ? GO:0002181 ... P0C0W1 20980660
    9 4v6i:AI (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    10 4v6i:AJ (8.8) BS01 rna ? GO:0000462 ... P38701 20980660
    11 4v6i:AK (8.8) BS01 rna ? GO:0000028 ... P06367 20980660
    12 4v6i:AL (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    13 4v6i:AM (8.8) BS01 rna N/A GO:0003676 ... N/A 20980660
    14 4v6i:AN (8.8) BS01 rna ? GO:0002181 ... P41057 20980660
    15 4v6i:AO (8.8) BS01 rna ? GO:0000462 ... P05756 20980660
    16 4v6i:AO (8.8) BS02 rna ? GO:0000462 ... P05756 20980660
    17 4v6i:AP (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    18 4v6i:AQ (8.8) BS01 rna ? GO:0000028 ... P02407 20980660
    19 4v6i:AR (8.8) BS01 rna ? GO:0000028 ... Q01855 20980660
    20 4v6i:AS (8.8) BS01 rna ? GO:0000028 ... P07280 20980660
    21 4v6i:AT (8.8) BS01 rna ? GO:0000447 ... P0C0V8 20980660
    22 4v6i:AU (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    23 4v6i:AV (8.8) BS01 rna ? GO:0002181 ... Q3E792 20980660
    24 4v6i:AW (8.8) BS01 rna N/A N/A N/A 20980660
    25 4v6i:AX (8.8) BS01 rna ? GO:0000028 ... P35997 20980660
    26 4v6i:AZ (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    27 4v6i:Aa (8.8) BS01 rna ? GO:0001965 ... P38011 20980660
    28 4v6i:Ab (8.8) BS01 rna N/A N/A N/A 20980660
    29 4v6i:BA (8.8) BS01 rna N/A GO:0003723 ... N/A 20980660
    30 4v6i:BB (8.8) BS01 peptide N/A GO:0003735 ... N/A 20980660
    31 4v6i:BB (8.8) BS02 rna N/A GO:0003735 ... N/A 20980660
    32 4v6i:BC (8.8) BS01 rna ? GO:0000027 ... P14126 20980660
    33 4v6i:BD (8.8) BS01 rna ? GO:0002181 ... P10664 20980660
    34 4v6i:BD (8.8) BS02 rna ? GO:0002181 ... P10664 20980660
    35 4v6i:BE (8.8) BS01 rna ? GO:0000027 ... P0C0W9 20980660
    36 4v6i:BE (8.8) BS02 rna ? GO:0000027 ... P0C0W9 20980660
    37 4v6i:BE (8.8) BS03 rna ? GO:0000027 ... P0C0W9 20980660
    38 4v6i:BF (8.8) BS01 rna ? GO:0002181 ... P05738 20980660
    39 4v6i:BG (8.8) BS01 rna ? GO:0000027 ... Q02326 20980660
    40 4v6i:BH (8.8) BS01 peptide ? GO:0000470 ... P17076 20980660
    41 4v6i:BH (8.8) BS02 rna ? GO:0000470 ... P17076 20980660
    42 4v6i:BH (8.8) BS03 rna ? GO:0000470 ... P17076 20980660
    43 4v6i:BI (8.8) BS01 rna ? GO:0000027 ... P41805 20980660
    44 4v6i:BI (8.8) BS02 rna ? GO:0000027 ... P41805 20980660
    45 4v6i:BI (8.8) BS03 rna ? GO:0000027 ... P41805 20980660
    46 4v6i:BJ (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    47 4v6i:BK (8.8) BS01 rna ? GO:0000470 ... P26784 20980660
    48 4v6i:BL (8.8) BS01 rna N/A N/A N/A 20980660
    49 4v6i:BM (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    50 4v6i:BM (8.8) BS02 rna N/A GO:0003735 ... N/A 20980660
    51 4v6i:BN (8.8) BS01 rna ? GO:0000027 ... P36105 20980660
    52 4v6i:BO (8.8) BS01 rna ? GO:0002181 ... P02406 20980660
    53 4v6i:BP (8.8) BS01 rna ? GO:0002181 ... P05748 20980660
    54 4v6i:BP (8.8) BS02 rna ? GO:0002181 ... P05748 20980660
    55 4v6i:BQ (8.8) BS01 rna ? GO:0000027 ... P26321 20980660
    56 4v6i:BQ (8.8) BS02 rna ? GO:0000027 ... P26321 20980660
    57 4v6i:BR (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    58 4v6i:BS (8.8) BS01 rna ? GO:0003735 ... Q943F3 20980660
    59 4v6i:BS (8.8) BS02 rna ? GO:0003735 ... Q943F3 20980660
    60 4v6i:BT (8.8) BS01 rna N/A GO:0003723 ... N/A 20980660
    61 4v6i:BT (8.8) BS02 rna N/A GO:0003723 ... N/A 20980660
    62 4v6i:BU (8.8) BS01 rna ? GO:0002181 ... Q02753 20980660
    63 4v6i:BU (8.8) BS02 rna ? GO:0002181 ... Q02753 20980660
    64 4v6i:BV (8.8) BS01 rna ? GO:0000448 ... P05740 20980660
    65 4v6i:BV (8.8) BS02 rna ? GO:0000448 ... P05740 20980660
    66 4v6i:BW (8.8) BS01 rna ? GO:0002181 ... P05749 20980660
    67 4v6i:BX (8.8) BS01 rna ? GO:0000027 ... P04456 20980660
    68 4v6i:BX (8.8) BS02 rna ? GO:0000027 ... P04456 20980660
    69 4v6i:BY (8.8) BS01 rna ? GO:0002181 ... P05743 20980660
    70 4v6i:BY (8.8) BS02 rna ? GO:0002181 ... P05743 20980660
    71 4v6i:BZ (8.8) BS01 rna ? GO:0002181 ... P04449 20980660
    72 4v6i:Ba (8.8) BS01 rna ? GO:0002181 ... P0C2H6 20980660
    73 4v6i:Bc (8.8) BS01 rna N/A GO:0000463 ... N/A 20980660
    74 4v6i:Bc (8.8) BS02 rna N/A GO:0000463 ... N/A 20980660
    75 4v6i:Be (8.8) BS01 rna ? GO:0000463 ... P05737 20980660
    76 4v6i:Be (8.8) BS02 rna ? GO:0000463 ... P05737 20980660
    77 4v6i:Bf (8.8) BS01 rna ? GO:0002181 ... P14120 20980660
    78 4v6i:Bg (8.8) BS01 rna ? GO:0002181 ... P0C2H8 20980660
    79 4v6i:Bh (8.8) BS01 rna ? GO:0002181 ... P38061 20980660
    80 4v6i:Bi (8.8) BS01 rna ? GO:0002181 ... P87262 20980660
    81 4v6i:Bj (8.8) BS01 rna ? GO:0000027 ... P05744 20980660
    82 4v6i:Bk (8.8) BS01 rna ? GO:0002181 ... P05745 20980660
    83 4v6i:Bl (8.8) BS01 rna ? GO:0000448 ... P49166 20980660
    84 4v6i:Bl (8.8) BS02 rna ? GO:0000448 ... P49166 20980660
    85 4v6i:Bm (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    86 4v6i:Bn (8.8) BS01 rna ? GO:0002181 ... P49167 20980660
    87 4v6i:Bo (8.8) BS01 rna ? GO:0002181 ... P04650 20980660
    88 4v6i:Bo (8.8) BS02 rna ? GO:0002181 ... P04650 20980660
    89 4v6i:Bp (8.8) BS01 rna ? GO:0003735 ... P0CH08 20980660
    90 4v6i:Br (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    91 4v6i:Bs (8.8) BS01 rna ? GO:0000027 ... P05317 20980660
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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