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BioLiP
Download all results in tab-seperated text for 117 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v6d:AB (3.814) BS01 rna ? GO:0000028 ... P0A7V0 19696352
    2 4v6d:AC (3.814) BS01 rna ? GO:0000028 ... P0A7V3 19696352
    3 4v6d:AD (3.814) BS01 rna ? GO:0000028 ... P0A7V8 19696352
    4 4v6d:AE (3.814) BS01 rna ? GO:0000028 ... P0A7W1 19696352
    5 4v6d:AF (3.814) BS01 rna ? GO:0002181 ... P02358 19696352
    6 4v6d:AG (3.814) BS01 rna ? GO:0000028 ... P02359 19696352
    7 4v6d:AH (3.814) BS01 rna ? GO:0000028 ... P0A7W7 19696352
    8 4v6d:AI (3.814) BS01 rna ? GO:0000049 ... P0A7X3 19696352
    9 4v6d:AJ (3.814) BS01 rna ? GO:0000049 ... P0A7R5 19696352
    10 4v6d:AK (3.814) BS01 rna ? GO:0002181 ... P0A7R9 19696352
    11 4v6d:AK (3.814) BS02 rna ? GO:0002181 ... P0A7R9 19696352
    12 4v6d:AL (3.814) BS01 rna ? GO:0000049 ... P0A7S3 19696352
    13 4v6d:AM (3.814) BS01 rna ? GO:0000049 ... P0A7S9 19696352
    14 4v6d:AN (3.814) BS01 rna ? GO:0000028 ... P0AG59 19696352
    15 4v6d:AO (3.814) BS01 rna ? GO:0000028 ... P0ADZ4 19696352
    16 4v6d:AO (3.814) BS02 rna ? GO:0000028 ... P0ADZ4 19696352
    17 4v6d:AP (3.814) BS01 rna ? GO:0000028 ... P0A7T3 19696352
    18 4v6d:AQ (3.814) BS01 rna ? GO:0000028 ... P0AG63 19696352
    19 4v6d:AR (3.814) BS01 rna ? GO:0002181 ... P0A7T7 19696352
    20 4v6d:AS (3.814) BS01 rna ? GO:0000028 ... P0A7U3 19696352
    21 4v6d:AT (3.814) BS01 rna ? GO:0000028 ... P0A7U7 19696352
    22 4v6d:AU (3.814) BS01 rna ? GO:0000028 ... P68679 19696352
    23 4v6d:B0 (3.814) BS01 rna ? GO:0000027 ... P0A7N4 19696352
    24 4v6d:B1 (3.814) BS01 rna ? GO:0000027 ... P0A7N9 19696352
    25 4v6d:B2 (3.814) BS01 rna ? GO:0002181 ... P0A7P5 19696352
    26 4v6d:B3 (3.814) BS01 rna ? GO:0002181 ... P0A7Q1 19696352
    27 4v6d:B4 (3.814) BS01 rna ? GO:0002181 ... P0A7Q6 19696352
    28 4v6d:B4 (3.814) BS02 ZN ? GO:0002181 ... P0A7Q6 19696352
    29 4v6d:BC (3.814) BS01 rna ? GO:0000027 ... P60422 19696352
    30 4v6d:BD (3.814) BS01 rna ? GO:0000027 ... P60438 19696352
    31 4v6d:BE (3.814) BS01 rna ? GO:0001070 ... P60723 19696352
    32 4v6d:BF (3.814) BS01 rna ? GO:0000027 ... P62399 19696352
    33 4v6d:BF (3.814) BS02 rna ? GO:0000027 ... P62399 19696352
    34 4v6d:BG (3.814) BS01 rna ? GO:0000027 ... P0AG55 19696352
    35 4v6d:BH (3.814) BS01 rna ? GO:0002181 ... P0A7R1 19696352
    36 4v6d:BI (3.814) BS01 rna ? GO:0000027 ... P0A7J7 19696352
    37 4v6d:BJ (3.814) BS01 rna ? GO:0002181 ... P0AA10 19696352
    38 4v6d:BK (3.814) BS01 rna ? GO:0002181 ... P0ADY3 19696352
    39 4v6d:BK (3.814) BS02 rna ? GO:0002181 ... P0ADY3 19696352
    40 4v6d:BL (3.814) BS01 rna ? GO:0002181 ... P02413 19696352
    41 4v6d:BM (3.814) BS01 rna ? GO:0000027 ... P0ADY7 19696352
    42 4v6d:BM (3.814) BS02 rna ? GO:0000027 ... P0ADY7 19696352
    43 4v6d:BN (3.814) BS01 rna ? GO:0000027 ... P0AG44 19696352
    44 4v6d:BO (3.814) BS01 rna ? GO:0002181 ... P0C018 19696352
    45 4v6d:BO (3.814) BS02 rna ? GO:0002181 ... P0C018 19696352
    46 4v6d:BP (3.814) BS01 rna ? GO:0000027 ... P0A7K6 19696352
    47 4v6d:BP (3.814) BS02 rna ? GO:0000027 ... P0A7K6 19696352
    48 4v6d:BQ (3.814) BS01 rna ? GO:0000027 ... P0A7L3 19696352
    49 4v6d:BR (3.814) BS01 rna ? GO:0002181 ... P0AG48 19696352
    50 4v6d:BS (3.814) BS01 rna ? GO:0002181 ... P61175 19696352
    51 4v6d:BT (3.814) BS01 rna ? GO:0000027 ... P0ADZ0 19696352
    52 4v6d:BU (3.814) BS01 rna ? GO:0000027 ... P60624 19696352
    53 4v6d:BV (3.814) BS01 rna ? GO:0000027 ... P68919 19696352
    54 4v6d:BW (3.814) BS01 rna ? GO:0000027 ... P0A7L8 19696352
    55 4v6d:BX (3.814) BS01 rna ? GO:0000027 ... P0A7M2 19696352
    56 4v6d:BY (3.814) BS01 rna ? GO:0000027 ... P0A7M6 19696352
    57 4v6d:BZ (3.814) BS01 rna ? GO:0000027 ... P0AG51 19696352
    58 4v6d:CB (3.814) BS01 rna ? GO:0000028 ... P0A7V0 19696352
    59 4v6d:CB (3.814) BS02 rna ? GO:0000028 ... P0A7V0 19696352
    60 4v6d:CC (3.814) BS01 rna ? GO:0000028 ... P0A7V3 19696352
    61 4v6d:CD (3.814) BS01 rna ? GO:0000028 ... P0A7V8 19696352
    62 4v6d:CD (3.814) BS02 rna ? GO:0000028 ... P0A7V8 19696352
    63 4v6d:CE (3.814) BS01 rna ? GO:0000028 ... P0A7W1 19696352
    64 4v6d:CF (3.814) BS01 rna ? GO:0002181 ... P02358 19696352
    65 4v6d:CG (3.814) BS01 rna ? GO:0000028 ... P02359 19696352
    66 4v6d:CH (3.814) BS01 rna ? GO:0000028 ... P0A7W7 19696352
    67 4v6d:CI (3.814) BS01 rna ? GO:0000049 ... P0A7X3 19696352
    68 4v6d:CJ (3.814) BS01 rna ? GO:0000049 ... P0A7R5 19696352
    69 4v6d:CK (3.814) BS01 rna ? GO:0002181 ... P0A7R9 19696352
    70 4v6d:CL (3.814) BS01 rna ? GO:0000049 ... P0A7S3 19696352
    71 4v6d:CM (3.814) BS01 rna ? GO:0000049 ... P0A7S9 19696352
    72 4v6d:CN (3.814) BS01 rna ? GO:0000028 ... P0AG59 19696352
    73 4v6d:CO (3.814) BS01 rna ? GO:0000028 ... P0ADZ4 19696352
    74 4v6d:CO (3.814) BS02 rna ? GO:0000028 ... P0ADZ4 19696352
    75 4v6d:CP (3.814) BS01 rna ? GO:0000028 ... P0A7T3 19696352
    76 4v6d:CQ (3.814) BS01 rna ? GO:0000028 ... P0AG63 19696352
    77 4v6d:CR (3.814) BS01 rna ? GO:0002181 ... P0A7T7 19696352
    78 4v6d:CS (3.814) BS01 rna ? GO:0000028 ... P0A7U3 19696352
    79 4v6d:CT (3.814) BS01 rna ? GO:0000028 ... P0A7U7 19696352
    80 4v6d:CU (3.814) BS01 rna ? GO:0000028 ... P68679 19696352
    81 4v6d:D0 (3.814) BS01 rna ? GO:0000027 ... P0A7N4 19696352
    82 4v6d:D1 (3.814) BS01 rna ? GO:0000027 ... P0A7N9 19696352
    83 4v6d:D2 (3.814) BS01 rna ? GO:0002181 ... P0A7P5 19696352
    84 4v6d:D3 (3.814) BS01 rna ? GO:0002181 ... P0A7Q1 19696352
    85 4v6d:D4 (3.814) BS01 rna ? GO:0002181 ... P0A7Q6 19696352
    86 4v6d:D4 (3.814) BS02 ZN ? GO:0002181 ... P0A7Q6 19696352
    87 4v6d:DC (3.814) BS01 rna ? GO:0000027 ... P60422 19696352
    88 4v6d:DD (3.814) BS01 rna ? GO:0000027 ... P60438 19696352
    89 4v6d:DE (3.814) BS01 rna ? GO:0001070 ... P60723 19696352
    90 4v6d:DF (3.814) BS01 rna ? GO:0000027 ... P62399 19696352
    91 4v6d:DF (3.814) BS02 rna ? GO:0000027 ... P62399 19696352
    92 4v6d:DG (3.814) BS01 rna ? GO:0000027 ... P0AG55 19696352
    93 4v6d:DH (3.814) BS01 rna ? GO:0002181 ... P0A7R1 19696352
    94 4v6d:DI (3.814) BS01 rna ? GO:0000027 ... P0A7J7 19696352
    95 4v6d:DJ (3.814) BS01 rna ? GO:0002181 ... P0AA10 19696352
    96 4v6d:DK (3.814) BS01 rna ? GO:0002181 ... P0ADY3 19696352
    97 4v6d:DK (3.814) BS02 rna ? GO:0002181 ... P0ADY3 19696352
    98 4v6d:DL (3.814) BS01 rna ? GO:0002181 ... P02413 19696352
    99 4v6d:DM (3.814) BS01 rna ? GO:0000027 ... P0ADY7 19696352
    100 4v6d:DM (3.814) BS02 rna ? GO:0000027 ... P0ADY7 19696352
    101 4v6d:DN (3.814) BS01 rna ? GO:0000027 ... P0AG44 19696352
    102 4v6d:DO (3.814) BS01 rna ? GO:0002181 ... P0C018 19696352
    103 4v6d:DO (3.814) BS02 rna ? GO:0002181 ... P0C018 19696352
    104 4v6d:DP (3.814) BS01 rna ? GO:0000027 ... P0A7K6 19696352
    105 4v6d:DP (3.814) BS02 rna ? GO:0000027 ... P0A7K6 19696352
    106 4v6d:DQ (3.814) BS01 rna ? GO:0000027 ... P0A7L3 19696352
    107 4v6d:DR (3.814) BS01 rna ? GO:0002181 ... P0AG48 19696352
    108 4v6d:DS (3.814) BS01 rna ? GO:0002181 ... P61175 19696352
    109 4v6d:DT (3.814) BS01 rna ? GO:0000027 ... P0ADZ0 19696352
    110 4v6d:DU (3.814) BS01 rna ? GO:0000027 ... P60624 19696352
    111 4v6d:DV (3.814) BS01 rna ? GO:0000027 ... P68919 19696352
    112 4v6d:DW (3.814) BS01 rna ? GO:0000027 ... P0A7L8 19696352
    113 4v6d:DW (3.814) BS02 rna ? GO:0000027 ... P0A7L8 19696352
    114 4v6d:DX (3.814) BS01 rna ? GO:0000027 ... P0A7M2 19696352
    115 4v6d:DY (3.814) BS01 rna ? GO:0000027 ... P0A7M6 19696352
    116 4v6d:DZ (3.814) BS01 rna ? GO:0000027 ... P0AG51 19696352
    117 4v6d:DZ (3.814) BS02 rna ? GO:0000027 ... P0AG51 19696352
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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