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BioLiP
Download all results in tab-seperated text for 118 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v5y:AB (4.45) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    2 4v5y:AC (4.45) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    3 4v5y:AD (4.45) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    4 4v5y:AE (4.45) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    5 4v5y:AF (4.45) BS01 rna ? GO:0002181 ... P02358 17660832
    6 4v5y:AG (4.45) BS01 rna ? GO:0000028 ... P02359 17660832
    7 4v5y:AH (4.45) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    8 4v5y:AI (4.45) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    9 4v5y:AJ (4.45) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    10 4v5y:AK (4.45) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    11 4v5y:AL (4.45) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    12 4v5y:AM (4.45) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    13 4v5y:AN (4.45) BS01 rna ? GO:0000028 ... P0AG59 17660832
    14 4v5y:AO (4.45) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    15 4v5y:AO (4.45) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    16 4v5y:AP (4.45) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    17 4v5y:AQ (4.45) BS01 rna ? GO:0000028 ... P0AG63 17660832
    18 4v5y:AR (4.45) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    19 4v5y:AS (4.45) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    20 4v5y:AT (4.45) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    21 4v5y:AU (4.45) BS01 rna ? GO:0000028 ... P68679 17660832
    22 4v5y:B0 (4.45) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    23 4v5y:B1 (4.45) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    24 4v5y:B2 (4.45) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    25 4v5y:B3 (4.45) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    26 4v5y:B4 (4.45) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    27 4v5y:B4 (4.45) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    28 4v5y:B6 (4.45) BS01 rna ? GO:0005737 ... Q9WX76 17660832
    29 4v5y:BC (4.45) BS01 rna ? GO:0000027 ... P60422 17660832
    30 4v5y:BD (4.45) BS01 rna ? GO:0000027 ... P60438 17660832
    31 4v5y:BE (4.45) BS01 rna ? GO:0001070 ... P60723 17660832
    32 4v5y:BF (4.45) BS01 rna ? GO:0000027 ... P62399 17660832
    33 4v5y:BF (4.45) BS02 rna ? GO:0000027 ... P62399 17660832
    34 4v5y:BG (4.45) BS01 rna ? GO:0000027 ... P0AG55 17660832
    35 4v5y:BH (4.45) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    36 4v5y:BH (4.45) BS02 rna ? GO:0002181 ... P0A7R1 17660832
    37 4v5y:BI (4.45) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    38 4v5y:BJ (4.45) BS01 rna ? GO:0002181 ... P0AA10 17660832
    39 4v5y:BK (4.45) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    40 4v5y:BL (4.45) BS01 rna ? GO:0002181 ... P02413 17660832
    41 4v5y:BM (4.45) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    42 4v5y:BM (4.45) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    43 4v5y:BN (4.45) BS01 rna ? GO:0000027 ... P0AG44 17660832
    44 4v5y:BO (4.45) BS01 rna ? GO:0002181 ... P0C018 17660832
    45 4v5y:BO (4.45) BS02 rna ? GO:0002181 ... P0C018 17660832
    46 4v5y:BP (4.45) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    47 4v5y:BP (4.45) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    48 4v5y:BQ (4.45) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    49 4v5y:BR (4.45) BS01 rna ? GO:0002181 ... P0AG48 17660832
    50 4v5y:BS (4.45) BS01 rna ? GO:0002181 ... P61175 17660832
    51 4v5y:BT (4.45) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    52 4v5y:BU (4.45) BS01 rna ? GO:0000027 ... P60624 17660832
    53 4v5y:BV (4.45) BS01 rna ? GO:0000027 ... P68919 17660832
    54 4v5y:BV (4.45) BS02 rna ? GO:0000027 ... P68919 17660832
    55 4v5y:BW (4.45) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    56 4v5y:BW (4.45) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    57 4v5y:BX (4.45) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    58 4v5y:BY (4.45) BS01 rna ? GO:0000027 ... P0AG51 17660832
    59 4v5y:BY (4.45) BS02 rna ? GO:0000027 ... P0AG51 17660832
    60 4v5y:BZ (4.45) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    61 4v5y:CB (4.45) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    62 4v5y:CC (4.45) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    63 4v5y:CD (4.45) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    64 4v5y:CE (4.45) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    65 4v5y:CF (4.45) BS01 rna ? GO:0002181 ... P02358 17660832
    66 4v5y:CG (4.45) BS01 rna ? GO:0000028 ... P02359 17660832
    67 4v5y:CH (4.45) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    68 4v5y:CI (4.45) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    69 4v5y:CJ (4.45) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    70 4v5y:CK (4.45) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    71 4v5y:CL (4.45) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    72 4v5y:CM (4.45) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    73 4v5y:CN (4.45) BS01 rna ? GO:0000028 ... P0AG59 17660832
    74 4v5y:CO (4.45) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    75 4v5y:CO (4.45) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    76 4v5y:CP (4.45) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    77 4v5y:CQ (4.45) BS01 rna ? GO:0000028 ... P0AG63 17660832
    78 4v5y:CR (4.45) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    79 4v5y:CS (4.45) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    80 4v5y:CT (4.45) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    81 4v5y:CU (4.45) BS01 rna ? GO:0000028 ... P68679 17660832
    82 4v5y:D0 (4.45) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    83 4v5y:D1 (4.45) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    84 4v5y:D2 (4.45) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    85 4v5y:D3 (4.45) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    86 4v5y:D4 (4.45) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    87 4v5y:D4 (4.45) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    88 4v5y:D6 (4.45) BS01 rna ? GO:0005737 ... Q9WX76 17660832
    89 4v5y:DC (4.45) BS01 rna ? GO:0000027 ... P60422 17660832
    90 4v5y:DD (4.45) BS01 rna ? GO:0000027 ... P60438 17660832
    91 4v5y:DE (4.45) BS01 rna ? GO:0001070 ... P60723 17660832
    92 4v5y:DF (4.45) BS01 rna ? GO:0000027 ... P62399 17660832
    93 4v5y:DF (4.45) BS02 rna ? GO:0000027 ... P62399 17660832
    94 4v5y:DG (4.45) BS01 rna ? GO:0000027 ... P0AG55 17660832
    95 4v5y:DH (4.45) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    96 4v5y:DI (4.45) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    97 4v5y:DJ (4.45) BS01 rna ? GO:0002181 ... P0AA10 17660832
    98 4v5y:DK (4.45) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    99 4v5y:DL (4.45) BS01 rna ? GO:0002181 ... P02413 17660832
    100 4v5y:DM (4.45) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    101 4v5y:DM (4.45) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    102 4v5y:DN (4.45) BS01 rna ? GO:0000027 ... P0AG44 17660832
    103 4v5y:DO (4.45) BS01 rna ? GO:0002181 ... P0C018 17660832
    104 4v5y:DO (4.45) BS02 rna ? GO:0002181 ... P0C018 17660832
    105 4v5y:DP (4.45) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    106 4v5y:DP (4.45) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    107 4v5y:DQ (4.45) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    108 4v5y:DR (4.45) BS01 rna ? GO:0002181 ... P0AG48 17660832
    109 4v5y:DS (4.45) BS01 rna ? GO:0002181 ... P61175 17660832
    110 4v5y:DT (4.45) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    111 4v5y:DU (4.45) BS01 rna ? GO:0000027 ... P60624 17660832
    112 4v5y:DV (4.45) BS01 rna ? GO:0000027 ... P68919 17660832
    113 4v5y:DW (4.45) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    114 4v5y:DW (4.45) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    115 4v5y:DX (4.45) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    116 4v5y:DY (4.45) BS01 rna ? GO:0000027 ... P0AG51 17660832
    117 4v5y:DY (4.45) BS02 rna ? GO:0000027 ... P0AG51 17660832
    118 4v5y:DZ (4.45) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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