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BioLiP
Download all results in tab-seperated text for 152 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v5f:AB (3.6) BS01 rna ? GO:0003735 ... P80371 19833919
    2 4v5f:AC (3.6) BS01 rna ? GO:0003676 ... P80372 19833919
    3 4v5f:AD (3.6) BS01 rna ? GO:0003723 ... P80373 19833919
    4 4v5f:AD (3.6) BS02 ZN ? GO:0003723 ... P80373 19833919
    5 4v5f:AE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 19833919
    6 4v5f:AF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 19833919
    7 4v5f:AG (3.6) BS01 rna ? GO:0000028 ... P17291 19833919
    8 4v5f:AG (3.6) BS02 rna ? GO:0000028 ... P17291 19833919
    9 4v5f:AH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    10 4v5f:AI (3.6) BS01 rna ? GO:0000049 ... P80374 19833919
    11 4v5f:AJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 19833919
    12 4v5f:AK (3.6) BS01 rna ? GO:0003735 ... P80376 19833919
    13 4v5f:AL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 19833919
    14 4v5f:AM (3.6) BS01 rna ? GO:0000049 ... P80377 19833919
    15 4v5f:AM (3.6) BS02 rna ? GO:0000049 ... P80377 19833919
    16 4v5f:AN (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    17 4v5f:AN (3.6) BS02 ZN N/A GO:0003735 ... N/A 19833919
    18 4v5f:AO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 19833919
    19 4v5f:AP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 19833919
    20 4v5f:AQ (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    21 4v5f:AR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 19833919
    22 4v5f:AS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 19833919
    23 4v5f:AT (3.6) BS01 rna ? GO:0003723 ... P80380 19833919
    24 4v5f:AY (3.6) BS01 rna ? GO:0003746 ... Q5SHN5 19833919
    25 4v5f:AY (3.6) BS02 rna ? GO:0003746 ... Q5SHN5 19833919
    26 4v5f:AY (3.6) BS03 rna ? GO:0003746 ... Q5SHN5 19833919
    27 4v5f:AY (3.6) BS04 rna ? GO:0003746 ... Q5SHN5 19833919
    28 4v5f:AY (3.6) BS05 FUA ? GO:0003746 ... Q5SHN5 19833919
    29 4v5f:AY (3.6) BS06 GDP ? GO:0003746 ... Q5SHN5 19833919
    30 4v5f:B0 (3.6) BS01 rna ? GO:0003735 ... P60493 19833919
    31 4v5f:B0 (3.6) BS02 rna ? GO:0003735 ... P60493 19833919
    32 4v5f:B0 (3.6) BS03 rna ? GO:0003735 ... P60493 19833919
    33 4v5f:B1 (3.6) BS01 rna ? GO:0003735 ... P60494 19833919
    34 4v5f:B2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 19833919
    35 4v5f:B3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 19833919
    36 4v5f:B3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 19833919
    37 4v5f:B4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 19833919
    38 4v5f:B5 (3.6) BS01 rna ? GO:0003735 ... P80339 19833919
    39 4v5f:B6 (3.6) BS01 rna ? GO:0000049 ... P35871 19833919
    40 4v5f:B7 (3.6) BS01 rna ? GO:0003735 ... P80340 19833919
    41 4v5f:B8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 19833919
    42 4v5f:B9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 19833919
    43 4v5f:B9 (3.6) BS02 ZN ? GO:0003735 ... Q5SHR2 19833919
    44 4v5f:BC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 19833919
    45 4v5f:BC (3.6) BS02 rna ? GO:0000049 ... Q5SLP7 19833919
    46 4v5f:BD (3.6) BS01 rna ? GO:0002181 ... P60405 19833919
    47 4v5f:BE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 19833919
    48 4v5f:BF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 19833919
    49 4v5f:BG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 19833919
    50 4v5f:BG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 19833919
    51 4v5f:BG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 19833919
    52 4v5f:BH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    53 4v5f:BJ (3.6) BS01 rna N/A N/A N/A 19833919
    54 4v5f:BK (3.6) BS01 rna ? GO:0003735 ... Q5SLP6 19833919
    55 4v5f:BL (3.6) BS01 peptide N/A N/A N/A 19833919
    56 4v5f:BN (3.6) BS01 rna ? GO:0003729 ... P60488 19833919
    57 4v5f:BO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 19833919
    58 4v5f:BO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 19833919
    59 4v5f:BP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 19833919
    60 4v5f:BQ (3.6) BS01 rna ? GO:0000049 ... P60489 19833919
    61 4v5f:BQ (3.6) BS02 rna ? GO:0000049 ... P60489 19833919
    62 4v5f:BR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 19833919
    63 4v5f:BS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 19833919
    64 4v5f:BS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 19833919
    65 4v5f:BT (3.6) BS01 rna ? GO:0003735 ... P60490 19833919
    66 4v5f:BT (3.6) BS02 rna ? GO:0003735 ... P60490 19833919
    67 4v5f:BU (3.6) BS01 rna ? GO:0000027 ... P60491 19833919
    68 4v5f:BV (3.6) BS01 rna ? GO:0003723 ... P60492 19833919
    69 4v5f:BW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 19833919
    70 4v5f:BX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 19833919
    71 4v5f:BY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 19833919
    72 4v5f:BZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 19833919
    73 4v5f:BZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 19833919
    74 4v5f:Bl (3.6) BS01 peptide N/A N/A N/A 19833919
    75 4v5f:CB (3.6) BS01 rna ? GO:0003735 ... P80371 19833919
    76 4v5f:CC (3.6) BS01 rna ? GO:0003676 ... P80372 19833919
    77 4v5f:CD (3.6) BS01 rna ? GO:0003723 ... P80373 19833919
    78 4v5f:CD (3.6) BS02 ZN ? GO:0003723 ... P80373 19833919
    79 4v5f:CE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 19833919
    80 4v5f:CF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 19833919
    81 4v5f:CG (3.6) BS01 rna ? GO:0000028 ... P17291 19833919
    82 4v5f:CG (3.6) BS02 rna ? GO:0000028 ... P17291 19833919
    83 4v5f:CH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    84 4v5f:CI (3.6) BS01 rna ? GO:0000049 ... P80374 19833919
    85 4v5f:CI (3.6) BS02 rna ? GO:0000049 ... P80374 19833919
    86 4v5f:CJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 19833919
    87 4v5f:CK (3.6) BS01 rna ? GO:0003735 ... P80376 19833919
    88 4v5f:CL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 19833919
    89 4v5f:CM (3.6) BS01 rna ? GO:0000049 ... P80377 19833919
    90 4v5f:CM (3.6) BS02 rna ? GO:0000049 ... P80377 19833919
    91 4v5f:CN (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    92 4v5f:CN (3.6) BS02 ZN N/A GO:0003735 ... N/A 19833919
    93 4v5f:CO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 19833919
    94 4v5f:CO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 19833919
    95 4v5f:CP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 19833919
    96 4v5f:CQ (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    97 4v5f:CR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 19833919
    98 4v5f:CS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 19833919
    99 4v5f:CT (3.6) BS01 rna ? GO:0003723 ... P80380 19833919
    100 4v5f:CY (3.6) BS01 rna ? GO:0003746 ... Q5SHN5 19833919
    101 4v5f:CY (3.6) BS02 rna ? GO:0003746 ... Q5SHN5 19833919
    102 4v5f:CY (3.6) BS03 rna ? GO:0003746 ... Q5SHN5 19833919
    103 4v5f:CY (3.6) BS04 rna ? GO:0003746 ... Q5SHN5 19833919
    104 4v5f:CY (3.6) BS05 FUA ? GO:0003746 ... Q5SHN5 19833919
    105 4v5f:CY (3.6) BS06 GDP ? GO:0003746 ... Q5SHN5 19833919
    106 4v5f:D0 (3.6) BS01 rna ? GO:0003735 ... P60493 19833919
    107 4v5f:D0 (3.6) BS02 rna ? GO:0003735 ... P60493 19833919
    108 4v5f:D0 (3.6) BS03 rna ? GO:0003735 ... P60493 19833919
    109 4v5f:D1 (3.6) BS01 rna ? GO:0003735 ... P60494 19833919
    110 4v5f:D1 (3.6) BS02 rna ? GO:0003735 ... P60494 19833919
    111 4v5f:D2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 19833919
    112 4v5f:D3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 19833919
    113 4v5f:D3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 19833919
    114 4v5f:D4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 19833919
    115 4v5f:D5 (3.6) BS01 rna ? GO:0003735 ... P80339 19833919
    116 4v5f:D6 (3.6) BS01 rna ? GO:0000049 ... P35871 19833919
    117 4v5f:D7 (3.6) BS01 rna ? GO:0003735 ... P80340 19833919
    118 4v5f:D8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 19833919
    119 4v5f:D9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 19833919
    120 4v5f:D9 (3.6) BS02 ZN ? GO:0003735 ... Q5SHR2 19833919
    121 4v5f:DC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 19833919
    122 4v5f:DC (3.6) BS02 rna ? GO:0000049 ... Q5SLP7 19833919
    123 4v5f:DD (3.6) BS01 rna ? GO:0002181 ... P60405 19833919
    124 4v5f:DD (3.6) BS02 rna ? GO:0002181 ... P60405 19833919
    125 4v5f:DE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 19833919
    126 4v5f:DF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 19833919
    127 4v5f:DG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 19833919
    128 4v5f:DG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 19833919
    129 4v5f:DG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 19833919
    130 4v5f:DH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    131 4v5f:DJ (3.6) BS01 rna N/A N/A N/A 19833919
    132 4v5f:DK (3.6) BS01 rna ? GO:0003735 ... Q5SLP6 19833919
    133 4v5f:DL (3.6) BS01 peptide N/A N/A N/A 19833919
    134 4v5f:DN (3.6) BS01 rna ? GO:0003729 ... P60488 19833919
    135 4v5f:DO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 19833919
    136 4v5f:DO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 19833919
    137 4v5f:DP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 19833919
    138 4v5f:DQ (3.6) BS01 rna ? GO:0000049 ... P60489 19833919
    139 4v5f:DQ (3.6) BS02 rna ? GO:0000049 ... P60489 19833919
    140 4v5f:DR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 19833919
    141 4v5f:DS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 19833919
    142 4v5f:DS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 19833919
    143 4v5f:DT (3.6) BS01 rna ? GO:0003735 ... P60490 19833919
    144 4v5f:DT (3.6) BS02 rna ? GO:0003735 ... P60490 19833919
    145 4v5f:DU (3.6) BS01 rna ? GO:0000027 ... P60491 19833919
    146 4v5f:DV (3.6) BS01 rna ? GO:0003723 ... P60492 19833919
    147 4v5f:DW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 19833919
    148 4v5f:DX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 19833919
    149 4v5f:DY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 19833919
    150 4v5f:DZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 19833919
    151 4v5f:DZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 19833919
    152 4v5f:Dl (3.6) BS01 peptide N/A N/A N/A 19833919
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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