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BioLiP
Download all results in tab-seperated text for 115 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v5b:A0 (3.74) BS01 rna ? GO:0000027 ... P0A7N4 18288106
    2 4v5b:A1 (3.74) BS01 rna ? GO:0000027 ... P0A7N9 18288106
    3 4v5b:A2 (3.74) BS01 rna ? GO:0002181 ... P0A7P5 18288106
    4 4v5b:A3 (3.74) BS01 rna ? GO:0002181 ... P0A7Q1 18288106
    5 4v5b:A4 (3.74) BS01 rna ? GO:0002181 ... P0A7Q6 18288106
    6 4v5b:AC (3.74) BS01 rna ? GO:0000027 ... P60422 18288106
    7 4v5b:AC (3.74) BS02 rna ? GO:0000027 ... P60422 18288106
    8 4v5b:AD (3.74) BS01 rna ? GO:0000027 ... P60438 18288106
    9 4v5b:AE (3.74) BS01 rna ? GO:0001070 ... P60723 18288106
    10 4v5b:AF (3.74) BS01 rna ? GO:0000027 ... P62399 18288106
    11 4v5b:AF (3.74) BS02 rna ? GO:0000027 ... P62399 18288106
    12 4v5b:AG (3.74) BS01 rna ? GO:0000027 ... P0AG55 18288106
    13 4v5b:AH (3.74) BS01 rna ? GO:0002181 ... P0A7R1 18288106
    14 4v5b:AH (3.74) BS02 rna ? GO:0002181 ... P0A7R1 18288106
    15 4v5b:AI (3.74) BS01 rna ? GO:0000027 ... P0A7J7 18288106
    16 4v5b:AJ (3.74) BS01 rna ? GO:0002181 ... P0AA10 18288106
    17 4v5b:AK (3.74) BS01 rna ? GO:0002181 ... P0ADY3 18288106
    18 4v5b:AL (3.74) BS01 rna ? GO:0002181 ... P02413 18288106
    19 4v5b:AM (3.74) BS01 rna ? GO:0000027 ... P0ADY7 18288106
    20 4v5b:AM (3.74) BS02 rna ? GO:0000027 ... P0ADY7 18288106
    21 4v5b:AN (3.74) BS01 rna ? GO:0000027 ... P0AG44 18288106
    22 4v5b:AO (3.74) BS01 rna ? GO:0002181 ... P0C018 18288106
    23 4v5b:AO (3.74) BS02 rna ? GO:0002181 ... P0C018 18288106
    24 4v5b:AP (3.74) BS01 rna ? GO:0000027 ... P0A7K6 18288106
    25 4v5b:AP (3.74) BS02 rna ? GO:0000027 ... P0A7K6 18288106
    26 4v5b:AQ (3.74) BS01 rna ? GO:0000027 ... P0A7L3 18288106
    27 4v5b:AR (3.74) BS01 rna ? GO:0002181 ... P0AG48 18288106
    28 4v5b:AS (3.74) BS01 rna ? GO:0002181 ... P61175 18288106
    29 4v5b:AT (3.74) BS01 rna ? GO:0000027 ... P0ADZ0 18288106
    30 4v5b:AU (3.74) BS01 rna ? GO:0000027 ... P60624 18288106
    31 4v5b:AV (3.74) BS01 rna ? GO:0000027 ... P68919 18288106
    32 4v5b:AV (3.74) BS02 rna ? GO:0000027 ... P68919 18288106
    33 4v5b:AW (3.74) BS01 rna ? GO:0000027 ... P0A7L8 18288106
    34 4v5b:AW (3.74) BS02 rna ? GO:0000027 ... P0A7L8 18288106
    35 4v5b:AX (3.74) BS01 rna ? GO:0000027 ... P0A7M6 18288106
    36 4v5b:AY (3.74) BS01 rna ? GO:0000027 ... P0AG51 18288106
    37 4v5b:AZ (3.74) BS01 rna ? GO:0002181 ... P0A7M9 18288106
    38 4v5b:BB (3.74) BS01 rna ? GO:0003735 ... P0A7V1 18288106
    39 4v5b:BC (3.74) BS01 rna ? GO:0000028 ... P0A7V4 18288106
    40 4v5b:BD (3.74) BS01 rna ? GO:0000028 ... P0A7V8 18288106
    41 4v5b:BE (3.74) BS01 rna ? GO:0000028 ... P0A7W3 18288106
    42 4v5b:BF (3.74) BS01 rna ? GO:0002181 ... P02358 18288106
    43 4v5b:BG (3.74) BS01 rna ? GO:0000028 ... P02359 18288106
    44 4v5b:BH (3.74) BS01 rna ? GO:0000028 ... P0A7W7 18288106
    45 4v5b:BI (3.74) BS01 rna ? GO:0000049 ... P0A7X3 18288106
    46 4v5b:BJ (3.74) BS01 rna ? GO:0000049 ... P0A7R6 18288106
    47 4v5b:BK (3.74) BS01 rna ? GO:0002181 ... P0A7R9 18288106
    48 4v5b:BL (3.74) BS01 rna ? GO:0000049 ... P0A7S4 18288106
    49 4v5b:BM (3.74) BS01 rna ? GO:0000049 ... P0A7S9 18288106
    50 4v5b:BN (3.74) BS01 rna ? GO:0003735 ... P0AG59 18288106
    51 4v5b:BO (3.74) BS01 rna ? GO:0000028 ... P0ADZ4 18288106
    52 4v5b:BP (3.74) BS01 rna ? GO:0003735 ... P0A7T4 18288106
    53 4v5b:BQ (3.74) BS01 rna ? GO:0000028 ... P0AG63 18288106
    54 4v5b:BR (3.74) BS01 rna ? GO:0002181 ... P0A7T7 18288106
    55 4v5b:BS (3.74) BS01 rna ? GO:0000028 ... P0A7U3 18288106
    56 4v5b:BT (3.74) BS01 rna ? GO:0000028 ... P0A7U7 18288106
    57 4v5b:BU (3.74) BS01 rna ? GO:0003735 ... P68680 18288106
    58 4v5b:C0 (3.74) BS01 rna ? GO:0000027 ... P0A7N4 18288106
    59 4v5b:C1 (3.74) BS01 rna ? GO:0000027 ... P0A7N9 18288106
    60 4v5b:C2 (3.74) BS01 rna ? GO:0002181 ... P0A7P5 18288106
    61 4v5b:C3 (3.74) BS01 rna ? GO:0002181 ... P0A7Q1 18288106
    62 4v5b:C4 (3.74) BS01 rna ? GO:0002181 ... P0A7Q6 18288106
    63 4v5b:CC (3.74) BS01 rna ? GO:0000027 ... P60422 18288106
    64 4v5b:CC (3.74) BS02 MG ? GO:0000027 ... P60422 18288106
    65 4v5b:CD (3.74) BS01 rna ? GO:0000027 ... P60438 18288106
    66 4v5b:CE (3.74) BS01 rna ? GO:0001070 ... P60723 18288106
    67 4v5b:CF (3.74) BS01 rna ? GO:0000027 ... P62399 18288106
    68 4v5b:CF (3.74) BS02 rna ? GO:0000027 ... P62399 18288106
    69 4v5b:CG (3.74) BS01 rna ? GO:0000027 ... P0AG55 18288106
    70 4v5b:CI (3.74) BS01 rna ? GO:0000027 ... P0A7J7 18288106
    71 4v5b:CJ (3.74) BS01 rna ? GO:0002181 ... P0AA10 18288106
    72 4v5b:CK (3.74) BS01 rna ? GO:0002181 ... P0ADY3 18288106
    73 4v5b:CK (3.74) BS02 rna ? GO:0002181 ... P0ADY3 18288106
    74 4v5b:CL (3.74) BS01 rna ? GO:0002181 ... P02413 18288106
    75 4v5b:CL (3.74) BS02 MG ? GO:0002181 ... P02413 18288106
    76 4v5b:CM (3.74) BS01 rna ? GO:0000027 ... P0ADY7 18288106
    77 4v5b:CM (3.74) BS02 rna ? GO:0000027 ... P0ADY7 18288106
    78 4v5b:CN (3.74) BS01 rna ? GO:0000027 ... P0AG44 18288106
    79 4v5b:CO (3.74) BS01 rna ? GO:0002181 ... P0C018 18288106
    80 4v5b:CO (3.74) BS02 rna ? GO:0002181 ... P0C018 18288106
    81 4v5b:CP (3.74) BS01 rna ? GO:0000027 ... P0A7K6 18288106
    82 4v5b:CP (3.74) BS02 rna ? GO:0000027 ... P0A7K6 18288106
    83 4v5b:CQ (3.74) BS01 rna ? GO:0000027 ... P0A7L3 18288106
    84 4v5b:CR (3.74) BS01 rna ? GO:0002181 ... P0AG48 18288106
    85 4v5b:CS (3.74) BS01 rna ? GO:0002181 ... P61175 18288106
    86 4v5b:CT (3.74) BS01 rna ? GO:0000027 ... P0ADZ0 18288106
    87 4v5b:CU (3.74) BS01 rna ? GO:0000027 ... P60624 18288106
    88 4v5b:CV (3.74) BS01 rna ? GO:0000027 ... P68919 18288106
    89 4v5b:CV (3.74) BS02 rna ? GO:0000027 ... P68919 18288106
    90 4v5b:CW (3.74) BS01 rna ? GO:0000027 ... P0A7L8 18288106
    91 4v5b:CW (3.74) BS02 rna ? GO:0000027 ... P0A7L8 18288106
    92 4v5b:CX (3.74) BS01 rna ? GO:0000027 ... P0A7M6 18288106
    93 4v5b:CY (3.74) BS01 rna ? GO:0000027 ... P0AG51 18288106
    94 4v5b:CZ (3.74) BS01 rna ? GO:0002181 ... P0A7M9 18288106
    95 4v5b:DB (3.74) BS01 rna ? GO:0003735 ... P0A7V1 18288106
    96 4v5b:DC (3.74) BS01 rna ? GO:0000028 ... P0A7V4 18288106
    97 4v5b:DD (3.74) BS01 rna ? GO:0000028 ... P0A7V8 18288106
    98 4v5b:DE (3.74) BS01 rna ? GO:0000028 ... P0A7W3 18288106
    99 4v5b:DF (3.74) BS01 rna ? GO:0002181 ... P02358 18288106
    100 4v5b:DG (3.74) BS01 rna ? GO:0000028 ... P02359 18288106
    101 4v5b:DH (3.74) BS01 rna ? GO:0000028 ... P0A7W7 18288106
    102 4v5b:DI (3.74) BS01 rna ? GO:0000049 ... P0A7X3 18288106
    103 4v5b:DJ (3.74) BS01 rna ? GO:0000049 ... P0A7R6 18288106
    104 4v5b:DK (3.74) BS01 rna ? GO:0002181 ... P0A7R9 18288106
    105 4v5b:DL (3.74) BS01 rna ? GO:0000049 ... P0A7S4 18288106
    106 4v5b:DM (3.74) BS01 rna ? GO:0000049 ... P0A7S9 18288106
    107 4v5b:DN (3.74) BS01 rna ? GO:0003735 ... P0AG59 18288106
    108 4v5b:DO (3.74) BS01 rna ? GO:0000028 ... P0ADZ4 18288106
    109 4v5b:DO (3.74) BS02 rna ? GO:0000028 ... P0ADZ4 18288106
    110 4v5b:DP (3.74) BS01 rna ? GO:0003735 ... P0A7T4 18288106
    111 4v5b:DQ (3.74) BS01 rna ? GO:0000028 ... P0AG63 18288106
    112 4v5b:DR (3.74) BS01 rna ? GO:0002181 ... P0A7T7 18288106
    113 4v5b:DS (3.74) BS01 rna ? GO:0000028 ... P0A7U3 18288106
    114 4v5b:DT (3.74) BS01 rna ? GO:0000028 ... P0A7U7 18288106
    115 4v5b:DU (3.74) BS01 rna ? GO:0003735 ... P68680 18288106
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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