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BioLiP
Download all results in tab-seperated text for 152 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v5a:AB (3.5) BS01 rna ? GO:0003735 ... P80371 17660830
    2 4v5a:AC (3.5) BS01 rna ? GO:0003676 ... P80372 17660830
    3 4v5a:AD (3.5) BS01 rna ? GO:0003723 ... P80373 17660830
    4 4v5a:AD (3.5) BS02 ZN ? GO:0003723 ... P80373 17660830
    5 4v5a:AE (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 17660830
    6 4v5a:AF (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 17660830
    7 4v5a:AG (3.5) BS01 rna ? GO:0000028 ... P17291 17660830
    8 4v5a:AG (3.5) BS02 rna ? GO:0000028 ... P17291 17660830
    9 4v5a:AH (3.5) BS01 rna N/A GO:0003735 ... N/A 17660830
    10 4v5a:AI (3.5) BS01 rna ? GO:0000049 ... P62669 17660830
    11 4v5a:AJ (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 17660830
    12 4v5a:AK (3.5) BS01 rna ? GO:0003735 ... P80376 17660830
    13 4v5a:AL (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 17660830
    14 4v5a:AL (3.5) BS02 MG ? GO:0000049 ... Q5SHN3 17660830
    15 4v5a:AL (3.5) BS03 MG ? GO:0000049 ... Q5SHN3 17660830
    16 4v5a:AM (3.5) BS01 rna ? GO:0000049 ... P80377 17660830
    17 4v5a:AM (3.5) BS02 MG ? GO:0000049 ... P80377 17660830
    18 4v5a:AN (3.5) BS01 rna N/A GO:0003735 ... N/A 17660830
    19 4v5a:AN (3.5) BS02 ZN N/A GO:0003735 ... N/A 17660830
    20 4v5a:AO (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 17660830
    21 4v5a:AP (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 17660830
    22 4v5a:AQ (3.5) BS01 rna N/A GO:0003735 ... N/A 17660830
    23 4v5a:AR (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 17660830
    24 4v5a:AS (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 17660830
    25 4v5a:AT (3.5) BS01 rna ? GO:0003723 ... P80380 17660830
    26 4v5a:AY (3.5) BS01 rna ? GO:0005737 ... Q9WX76 17660830
    27 4v5a:B0 (3.5) BS01 rna ? GO:0003735 ... P60493 17660830
    28 4v5a:B1 (3.5) BS01 rna ? GO:0003735 ... P60494 17660830
    29 4v5a:B1 (3.5) BS02 MG ? GO:0003735 ... P60494 17660830
    30 4v5a:B2 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 17660830
    31 4v5a:B2 (3.5) BS02 MG ? GO:0003735 ... Q5SHP6 17660830
    32 4v5a:B3 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 17660830
    33 4v5a:B3 (3.5) BS02 MG ? GO:0003735 ... Q5SHQ6 17660830
    34 4v5a:B4 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 17660830
    35 4v5a:B5 (3.5) BS01 rna ? GO:0003735 ... P80339 17660830
    36 4v5a:B6 (3.5) BS01 rna ? GO:0000049 ... P35871 17660830
    37 4v5a:B7 (3.5) BS01 rna ? GO:0003735 ... P80340 17660830
    38 4v5a:B7 (3.5) BS02 MG ? GO:0003735 ... P80340 17660830
    39 4v5a:B8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 17660830
    40 4v5a:BC (3.5) BS01 rna ? GO:0000049 ... Q5SLP7 17660830
    41 4v5a:BD (3.5) BS01 rna ? GO:0002181 ... P60405 17660830
    42 4v5a:BD (3.5) BS02 MG ? GO:0002181 ... P60405 17660830
    43 4v5a:BD (3.5) BS03 MG ? GO:0002181 ... P60405 17660830
    44 4v5a:BE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 17660830
    45 4v5a:BE (3.5) BS02 MG ? GO:0003735 ... Q5SHN8 17660830
    46 4v5a:BF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 17660830
    47 4v5a:BF (3.5) BS02 MG ? GO:0003735 ... Q5SHN9 17660830
    48 4v5a:BG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 17660830
    49 4v5a:BG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 17660830
    50 4v5a:BH (3.5) BS01 rna N/A GO:0003735 ... N/A 17660830
    51 4v5a:BI (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 17660830
    52 4v5a:BN (3.5) BS01 rna ? GO:0003729 ... P60488 17660830
    53 4v5a:BN (3.5) BS02 MG ? GO:0003729 ... P60488 17660830
    54 4v5a:BN (3.5) BS03 MG ? GO:0003729 ... P60488 17660830
    55 4v5a:BN (3.5) BS04 MG ? GO:0003729 ... P60488 17660830
    56 4v5a:BO (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 17660830
    57 4v5a:BO (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 17660830
    58 4v5a:BP (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 17660830
    59 4v5a:BP (3.5) BS02 MG ? GO:0003735 ... Q5SHQ7 17660830
    60 4v5a:BP (3.5) BS03 MG ? GO:0003735 ... Q5SHQ7 17660830
    61 4v5a:BQ (3.5) BS01 rna ? GO:0000049 ... P60489 17660830
    62 4v5a:BQ (3.5) BS02 rna ? GO:0000049 ... P60489 17660830
    63 4v5a:BR (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 17660830
    64 4v5a:BS (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 17660830
    65 4v5a:BS (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 17660830
    66 4v5a:BT (3.5) BS01 rna ? GO:0003735 ... P60490 17660830
    67 4v5a:BT (3.5) BS02 rna ? GO:0003735 ... P60490 17660830
    68 4v5a:BU (3.5) BS01 rna ? GO:0000027 ... P60491 17660830
    69 4v5a:BV (3.5) BS01 rna ? GO:0003723 ... P60492 17660830
    70 4v5a:BW (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 17660830
    71 4v5a:BX (3.5) BS01 rna ? GO:0000027 ... Q5SHP0 17660830
    72 4v5a:BX (3.5) BS02 MG ? GO:0000027 ... Q5SHP0 17660830
    73 4v5a:BY (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 17660830
    74 4v5a:BZ (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 17660830
    75 4v5a:BZ (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 17660830
    76 4v5a:CB (3.5) BS01 rna ? GO:0003735 ... P80371 17660830
    77 4v5a:CC (3.5) BS01 rna ? GO:0003676 ... P80372 17660830
    78 4v5a:CD (3.5) BS01 rna ? GO:0003723 ... P80373 17660830
    79 4v5a:CD (3.5) BS02 ZN ? GO:0003723 ... P80373 17660830
    80 4v5a:CE (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 17660830
    81 4v5a:CF (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 17660830
    82 4v5a:CG (3.5) BS01 rna ? GO:0000028 ... P17291 17660830
    83 4v5a:CG (3.5) BS02 rna ? GO:0000028 ... P17291 17660830
    84 4v5a:CH (3.5) BS01 rna N/A GO:0003735 ... N/A 17660830
    85 4v5a:CI (3.5) BS01 rna ? GO:0000049 ... P62669 17660830
    86 4v5a:CJ (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 17660830
    87 4v5a:CK (3.5) BS01 rna ? GO:0003735 ... P80376 17660830
    88 4v5a:CL (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 17660830
    89 4v5a:CL (3.5) BS02 MG ? GO:0000049 ... Q5SHN3 17660830
    90 4v5a:CM (3.5) BS01 rna ? GO:0000049 ... P80377 17660830
    91 4v5a:CM (3.5) BS02 MG ? GO:0000049 ... P80377 17660830
    92 4v5a:CN (3.5) BS01 rna N/A GO:0003735 ... N/A 17660830
    93 4v5a:CN (3.5) BS02 MG N/A GO:0003735 ... N/A 17660830
    94 4v5a:CN (3.5) BS03 ZN N/A GO:0003735 ... N/A 17660830
    95 4v5a:CO (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 17660830
    96 4v5a:CO (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 17660830
    97 4v5a:CP (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 17660830
    98 4v5a:CQ (3.5) BS01 rna N/A GO:0003735 ... N/A 17660830
    99 4v5a:CR (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 17660830
    100 4v5a:CS (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 17660830
    101 4v5a:CT (3.5) BS01 rna ? GO:0003723 ... P80380 17660830
    102 4v5a:CY (3.5) BS01 rna ? GO:0005737 ... Q9WX76 17660830
    103 4v5a:D0 (3.5) BS01 rna ? GO:0003735 ... P60493 17660830
    104 4v5a:D1 (3.5) BS01 rna ? GO:0003735 ... P60494 17660830
    105 4v5a:D1 (3.5) BS02 rna ? GO:0003735 ... P60494 17660830
    106 4v5a:D1 (3.5) BS03 MG ? GO:0003735 ... P60494 17660830
    107 4v5a:D1 (3.5) BS04 MG ? GO:0003735 ... P60494 17660830
    108 4v5a:D2 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 17660830
    109 4v5a:D2 (3.5) BS02 MG ? GO:0003735 ... Q5SHP6 17660830
    110 4v5a:D2 (3.5) BS03 MG ? GO:0003735 ... Q5SHP6 17660830
    111 4v5a:D3 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 17660830
    112 4v5a:D4 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 17660830
    113 4v5a:D5 (3.5) BS01 rna ? GO:0003735 ... P80339 17660830
    114 4v5a:D6 (3.5) BS01 rna ? GO:0000049 ... P35871 17660830
    115 4v5a:D7 (3.5) BS01 rna ? GO:0003735 ... P80340 17660830
    116 4v5a:D7 (3.5) BS02 MG ? GO:0003735 ... P80340 17660830
    117 4v5a:D8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 17660830
    118 4v5a:DC (3.5) BS01 rna ? GO:0000049 ... Q5SLP7 17660830
    119 4v5a:DD (3.5) BS01 rna ? GO:0002181 ... P60405 17660830
    120 4v5a:DD (3.5) BS02 MG ? GO:0002181 ... P60405 17660830
    121 4v5a:DE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 17660830
    122 4v5a:DE (3.5) BS02 MG ? GO:0003735 ... Q5SHN8 17660830
    123 4v5a:DF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 17660830
    124 4v5a:DF (3.5) BS02 MG ? GO:0003735 ... Q5SHN9 17660830
    125 4v5a:DF (3.5) BS03 MG ? GO:0003735 ... Q5SHN9 17660830
    126 4v5a:DF (3.5) BS04 MG ? GO:0003735 ... Q5SHN9 17660830
    127 4v5a:DG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 17660830
    128 4v5a:DG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 17660830
    129 4v5a:DH (3.5) BS01 rna N/A GO:0003735 ... N/A 17660830
    130 4v5a:DI (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 17660830
    131 4v5a:DN (3.5) BS01 rna ? GO:0003729 ... P60488 17660830
    132 4v5a:DN (3.5) BS02 MG ? GO:0003729 ... P60488 17660830
    133 4v5a:DO (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 17660830
    134 4v5a:DO (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 17660830
    135 4v5a:DP (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 17660830
    136 4v5a:DP (3.5) BS02 MG ? GO:0003735 ... Q5SHQ7 17660830
    137 4v5a:DP (3.5) BS03 MG ? GO:0003735 ... Q5SHQ7 17660830
    138 4v5a:DQ (3.5) BS01 rna ? GO:0000049 ... P60489 17660830
    139 4v5a:DR (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 17660830
    140 4v5a:DS (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 17660830
    141 4v5a:DS (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 17660830
    142 4v5a:DT (3.5) BS01 rna ? GO:0003735 ... P60490 17660830
    143 4v5a:DT (3.5) BS02 rna ? GO:0003735 ... P60490 17660830
    144 4v5a:DU (3.5) BS01 rna ? GO:0000027 ... P60491 17660830
    145 4v5a:DV (3.5) BS01 rna ? GO:0003723 ... P60492 17660830
    146 4v5a:DW (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 17660830
    147 4v5a:DX (3.5) BS01 rna ? GO:0000027 ... Q5SHP0 17660830
    148 4v5a:DX (3.5) BS02 MG ? GO:0000027 ... Q5SHP0 17660830
    149 4v5a:DX (3.5) BS03 MG ? GO:0000027 ... Q5SHP0 17660830
    150 4v5a:DY (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 17660830
    151 4v5a:DZ (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 17660830
    152 4v5a:DZ (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 17660830
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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