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BioLiP
Download all results in tab-seperated text for 120 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v56:AB (3.93) BS01 rna ? GO:0000028 ... P0A7V0 17696316
    2 4v56:AC (3.93) BS01 rna ? GO:0000028 ... P0A7V3 17696316
    3 4v56:AD (3.93) BS01 rna ? GO:0000028 ... P0A7V8 17696316
    4 4v56:AE (3.93) BS01 rna ? GO:0000028 ... P0A7W1 17696316
    5 4v56:AE (3.93) BS02 SCM ? GO:0000028 ... P0A7W1 17696316
    6 4v56:AF (3.93) BS01 rna ? GO:0002181 ... P02358 17696316
    7 4v56:AG (3.93) BS01 rna ? GO:0000028 ... P02359 17696316
    8 4v56:AH (3.93) BS01 rna ? GO:0000028 ... P0A7W7 17696316
    9 4v56:AI (3.93) BS01 rna ? GO:0000049 ... P0A7X3 17696316
    10 4v56:AJ (3.93) BS01 rna ? GO:0000049 ... P0A7R5 17696316
    11 4v56:AK (3.93) BS01 rna ? GO:0002181 ... P0A7R9 17696316
    12 4v56:AL (3.93) BS01 rna ? GO:0000049 ... P0A7S3 17696316
    13 4v56:AM (3.93) BS01 rna ? GO:0000049 ... P0A7S9 17696316
    14 4v56:AN (3.93) BS01 rna ? GO:0000028 ... P0AG59 17696316
    15 4v56:AO (3.93) BS01 rna ? GO:0000028 ... P0ADZ4 17696316
    16 4v56:AO (3.93) BS02 rna ? GO:0000028 ... P0ADZ4 17696316
    17 4v56:AP (3.93) BS01 rna ? GO:0000028 ... P0A7T3 17696316
    18 4v56:AQ (3.93) BS01 rna ? GO:0000028 ... P0AG63 17696316
    19 4v56:AR (3.93) BS01 rna ? GO:0002181 ... P0A7T7 17696316
    20 4v56:AS (3.93) BS01 rna ? GO:0000028 ... P0A7U3 17696316
    21 4v56:AT (3.93) BS01 rna ? GO:0000028 ... P0A7U7 17696316
    22 4v56:AU (3.93) BS01 rna ? GO:0000028 ... P68679 17696316
    23 4v56:B0 (3.93) BS01 rna ? GO:0000027 ... P0A7N4 17696316
    24 4v56:B1 (3.93) BS01 rna ? GO:0000027 ... P0A7N9 17696316
    25 4v56:B2 (3.93) BS01 rna ? GO:0002181 ... P0A7P5 17696316
    26 4v56:B3 (3.93) BS01 rna ? GO:0002181 ... P0A7Q1 17696316
    27 4v56:B4 (3.93) BS01 rna ? GO:0002181 ... P0A7Q6 17696316
    28 4v56:B4 (3.93) BS02 ZN ? GO:0002181 ... P0A7Q6 17696316
    29 4v56:BC (3.93) BS01 rna ? GO:0000027 ... P60422 17696316
    30 4v56:BD (3.93) BS01 rna ? GO:0000027 ... P60438 17696316
    31 4v56:BE (3.93) BS01 rna ? GO:0001070 ... P60723 17696316
    32 4v56:BF (3.93) BS01 rna ? GO:0000027 ... P62399 17696316
    33 4v56:BF (3.93) BS02 rna ? GO:0000027 ... P62399 17696316
    34 4v56:BG (3.93) BS01 rna ? GO:0000027 ... P0AG55 17696316
    35 4v56:BH (3.93) BS01 rna ? GO:0002181 ... P0A7R1 17696316
    36 4v56:BH (3.93) BS02 rna ? GO:0002181 ... P0A7R1 17696316
    37 4v56:BI (3.93) BS01 rna ? GO:0000027 ... P0A7J7 17696316
    38 4v56:BJ (3.93) BS01 rna ? GO:0002181 ... P0AA10 17696316
    39 4v56:BK (3.93) BS01 rna ? GO:0002181 ... P0ADY3 17696316
    40 4v56:BK (3.93) BS02 rna ? GO:0002181 ... P0ADY3 17696316
    41 4v56:BL (3.93) BS01 rna ? GO:0002181 ... P02413 17696316
    42 4v56:BM (3.93) BS01 rna ? GO:0000027 ... P0ADY7 17696316
    43 4v56:BM (3.93) BS02 rna ? GO:0000027 ... P0ADY7 17696316
    44 4v56:BN (3.93) BS01 rna ? GO:0000027 ... P0AG44 17696316
    45 4v56:BO (3.93) BS01 rna ? GO:0002181 ... P0C018 17696316
    46 4v56:BO (3.93) BS02 rna ? GO:0002181 ... P0C018 17696316
    47 4v56:BP (3.93) BS01 rna ? GO:0000027 ... P0A7K6 17696316
    48 4v56:BP (3.93) BS02 rna ? GO:0000027 ... P0A7K6 17696316
    49 4v56:BQ (3.93) BS01 rna ? GO:0000027 ... P0A7L3 17696316
    50 4v56:BR (3.93) BS01 rna ? GO:0002181 ... P0AG48 17696316
    51 4v56:BS (3.93) BS01 rna ? GO:0002181 ... P61175 17696316
    52 4v56:BT (3.93) BS01 rna ? GO:0000027 ... P0ADZ0 17696316
    53 4v56:BU (3.93) BS01 rna ? GO:0000027 ... P60624 17696316
    54 4v56:BV (3.93) BS01 rna ? GO:0000027 ... P68919 17696316
    55 4v56:BV (3.93) BS02 rna ? GO:0000027 ... P68919 17696316
    56 4v56:BW (3.93) BS01 rna ? GO:0000027 ... P0A7L8 17696316
    57 4v56:BW (3.93) BS02 rna ? GO:0000027 ... P0A7L8 17696316
    58 4v56:BX (3.93) BS01 rna ? GO:0000027 ... P0A7M6 17696316
    59 4v56:BY (3.93) BS01 rna ? GO:0000027 ... P0AG51 17696316
    60 4v56:BY (3.93) BS02 rna ? GO:0000027 ... P0AG51 17696316
    61 4v56:BZ (3.93) BS01 rna ? GO:0000027 ... P0A7M2 17696316
    62 4v56:CB (3.93) BS01 rna ? GO:0000028 ... P0A7V0 17696316
    63 4v56:CC (3.93) BS01 rna ? GO:0000028 ... P0A7V3 17696316
    64 4v56:CD (3.93) BS01 rna ? GO:0000028 ... P0A7V8 17696316
    65 4v56:CE (3.93) BS01 rna ? GO:0000028 ... P0A7W1 17696316
    66 4v56:CF (3.93) BS01 rna ? GO:0002181 ... P02358 17696316
    67 4v56:CG (3.93) BS01 rna ? GO:0000028 ... P02359 17696316
    68 4v56:CH (3.93) BS01 rna ? GO:0000028 ... P0A7W7 17696316
    69 4v56:CI (3.93) BS01 rna ? GO:0000049 ... P0A7X3 17696316
    70 4v56:CJ (3.93) BS01 rna ? GO:0000049 ... P0A7R5 17696316
    71 4v56:CJ (3.93) BS02 rna ? GO:0000049 ... P0A7R5 17696316
    72 4v56:CK (3.93) BS01 rna ? GO:0002181 ... P0A7R9 17696316
    73 4v56:CL (3.93) BS01 rna ? GO:0000049 ... P0A7S3 17696316
    74 4v56:CM (3.93) BS01 rna ? GO:0000049 ... P0A7S9 17696316
    75 4v56:CN (3.93) BS01 rna ? GO:0000028 ... P0AG59 17696316
    76 4v56:CO (3.93) BS01 rna ? GO:0000028 ... P0ADZ4 17696316
    77 4v56:CO (3.93) BS02 rna ? GO:0000028 ... P0ADZ4 17696316
    78 4v56:CP (3.93) BS01 rna ? GO:0000028 ... P0A7T3 17696316
    79 4v56:CQ (3.93) BS01 rna ? GO:0000028 ... P0AG63 17696316
    80 4v56:CR (3.93) BS01 rna ? GO:0002181 ... P0A7T7 17696316
    81 4v56:CS (3.93) BS01 rna ? GO:0000028 ... P0A7U3 17696316
    82 4v56:CT (3.93) BS01 rna ? GO:0000028 ... P0A7U7 17696316
    83 4v56:CU (3.93) BS01 rna ? GO:0000028 ... P68679 17696316
    84 4v56:D0 (3.93) BS01 rna ? GO:0000027 ... P0A7N4 17696316
    85 4v56:D1 (3.93) BS01 rna ? GO:0000027 ... P0A7N9 17696316
    86 4v56:D2 (3.93) BS01 rna ? GO:0002181 ... P0A7P5 17696316
    87 4v56:D3 (3.93) BS01 rna ? GO:0002181 ... P0A7Q1 17696316
    88 4v56:D4 (3.93) BS01 rna ? GO:0002181 ... P0A7Q6 17696316
    89 4v56:D4 (3.93) BS02 ZN ? GO:0002181 ... P0A7Q6 17696316
    90 4v56:DC (3.93) BS01 rna ? GO:0000027 ... P60422 17696316
    91 4v56:DD (3.93) BS01 rna ? GO:0000027 ... P60438 17696316
    92 4v56:DE (3.93) BS01 rna ? GO:0001070 ... P60723 17696316
    93 4v56:DF (3.93) BS01 rna ? GO:0000027 ... P62399 17696316
    94 4v56:DF (3.93) BS02 rna ? GO:0000027 ... P62399 17696316
    95 4v56:DG (3.93) BS01 rna ? GO:0000027 ... P0AG55 17696316
    96 4v56:DH (3.93) BS01 rna ? GO:0002181 ... P0A7R1 17696316
    97 4v56:DI (3.93) BS01 rna ? GO:0000027 ... P0A7J7 17696316
    98 4v56:DJ (3.93) BS01 rna ? GO:0002181 ... P0AA10 17696316
    99 4v56:DK (3.93) BS01 rna ? GO:0002181 ... P0ADY3 17696316
    100 4v56:DK (3.93) BS02 rna ? GO:0002181 ... P0ADY3 17696316
    101 4v56:DL (3.93) BS01 rna ? GO:0002181 ... P02413 17696316
    102 4v56:DM (3.93) BS01 rna ? GO:0000027 ... P0ADY7 17696316
    103 4v56:DM (3.93) BS02 rna ? GO:0000027 ... P0ADY7 17696316
    104 4v56:DN (3.93) BS01 rna ? GO:0000027 ... P0AG44 17696316
    105 4v56:DO (3.93) BS01 rna ? GO:0002181 ... P0C018 17696316
    106 4v56:DO (3.93) BS02 rna ? GO:0002181 ... P0C018 17696316
    107 4v56:DP (3.93) BS01 rna ? GO:0000027 ... P0A7K6 17696316
    108 4v56:DP (3.93) BS02 rna ? GO:0000027 ... P0A7K6 17696316
    109 4v56:DQ (3.93) BS01 rna ? GO:0000027 ... P0A7L3 17696316
    110 4v56:DR (3.93) BS01 rna ? GO:0002181 ... P0AG48 17696316
    111 4v56:DS (3.93) BS01 rna ? GO:0002181 ... P61175 17696316
    112 4v56:DT (3.93) BS01 rna ? GO:0000027 ... P0ADZ0 17696316
    113 4v56:DU (3.93) BS01 rna ? GO:0000027 ... P60624 17696316
    114 4v56:DV (3.93) BS01 rna ? GO:0000027 ... P68919 17696316
    115 4v56:DW (3.93) BS01 rna ? GO:0000027 ... P0A7L8 17696316
    116 4v56:DW (3.93) BS02 rna ? GO:0000027 ... P0A7L8 17696316
    117 4v56:DX (3.93) BS01 rna ? GO:0000027 ... P0A7M6 17696316
    118 4v56:DY (3.93) BS01 rna ? GO:0000027 ... P0AG51 17696316
    119 4v56:DY (3.93) BS02 rna ? GO:0000027 ... P0AG51 17696316
    120 4v56:DZ (3.93) BS01 rna ? GO:0000027 ... P0A7M2 17696316
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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