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BioLiP
Download all results in tab-seperated text for 120 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v55:AB (4.0) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    2 4v55:AC (4.0) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    3 4v55:AD (4.0) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    4 4v55:AE (4.0) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    5 4v55:AF (4.0) BS01 rna ? GO:0002181 ... P02358 17660832
    6 4v55:AG (4.0) BS01 rna ? GO:0000028 ... P02359 17660832
    7 4v55:AH (4.0) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    8 4v55:AI (4.0) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    9 4v55:AJ (4.0) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    10 4v55:AK (4.0) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    11 4v55:AL (4.0) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    12 4v55:AM (4.0) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    13 4v55:AN (4.0) BS01 rna ? GO:0000028 ... P0AG59 17660832
    14 4v55:AO (4.0) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    15 4v55:AO (4.0) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    16 4v55:AP (4.0) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    17 4v55:AQ (4.0) BS01 rna ? GO:0000028 ... P0AG63 17660832
    18 4v55:AR (4.0) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    19 4v55:AS (4.0) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    20 4v55:AT (4.0) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    21 4v55:AU (4.0) BS01 rna ? GO:0000028 ... P68679 17660832
    22 4v55:B0 (4.0) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    23 4v55:B1 (4.0) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    24 4v55:B2 (4.0) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    25 4v55:B3 (4.0) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    26 4v55:B4 (4.0) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    27 4v55:B4 (4.0) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    28 4v55:B6 (4.0) BS01 rna ? GO:0005737 ... Q9WX76 17660832
    29 4v55:BC (4.0) BS01 rna ? GO:0000027 ... P60422 17660832
    30 4v55:BC (4.0) BS02 rna ? GO:0000027 ... P60422 17660832
    31 4v55:BD (4.0) BS01 rna ? GO:0000027 ... P60438 17660832
    32 4v55:BE (4.0) BS01 rna ? GO:0001070 ... P60723 17660832
    33 4v55:BF (4.0) BS01 rna ? GO:0000027 ... P62399 17660832
    34 4v55:BF (4.0) BS02 rna ? GO:0000027 ... P62399 17660832
    35 4v55:BG (4.0) BS01 rna ? GO:0000027 ... P0AG55 17660832
    36 4v55:BH (4.0) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    37 4v55:BI (4.0) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    38 4v55:BJ (4.0) BS01 rna ? GO:0002181 ... P0AA10 17660832
    39 4v55:BK (4.0) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    40 4v55:BK (4.0) BS02 rna ? GO:0002181 ... P0ADY3 17660832
    41 4v55:BL (4.0) BS01 rna ? GO:0002181 ... P02413 17660832
    42 4v55:BM (4.0) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    43 4v55:BM (4.0) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    44 4v55:BN (4.0) BS01 rna ? GO:0000027 ... P0AG44 17660832
    45 4v55:BO (4.0) BS01 rna ? GO:0002181 ... P0C018 17660832
    46 4v55:BO (4.0) BS02 rna ? GO:0002181 ... P0C018 17660832
    47 4v55:BP (4.0) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    48 4v55:BP (4.0) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    49 4v55:BQ (4.0) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    50 4v55:BR (4.0) BS01 rna ? GO:0002181 ... P0AG48 17660832
    51 4v55:BS (4.0) BS01 rna ? GO:0002181 ... P61175 17660832
    52 4v55:BT (4.0) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    53 4v55:BU (4.0) BS01 rna ? GO:0000027 ... P60624 17660832
    54 4v55:BV (4.0) BS01 rna ? GO:0000027 ... P68919 17660832
    55 4v55:BV (4.0) BS02 rna ? GO:0000027 ... P68919 17660832
    56 4v55:BW (4.0) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    57 4v55:BW (4.0) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    58 4v55:BX (4.0) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    59 4v55:BY (4.0) BS01 rna ? GO:0000027 ... P0AG51 17660832
    60 4v55:BY (4.0) BS02 rna ? GO:0000027 ... P0AG51 17660832
    61 4v55:BZ (4.0) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    62 4v55:CB (4.0) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    63 4v55:CC (4.0) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    64 4v55:CD (4.0) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    65 4v55:CE (4.0) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    66 4v55:CF (4.0) BS01 rna ? GO:0002181 ... P02358 17660832
    67 4v55:CG (4.0) BS01 rna ? GO:0000028 ... P02359 17660832
    68 4v55:CH (4.0) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    69 4v55:CI (4.0) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    70 4v55:CJ (4.0) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    71 4v55:CK (4.0) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    72 4v55:CL (4.0) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    73 4v55:CM (4.0) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    74 4v55:CN (4.0) BS01 rna ? GO:0000028 ... P0AG59 17660832
    75 4v55:CO (4.0) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    76 4v55:CO (4.0) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    77 4v55:CP (4.0) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    78 4v55:CQ (4.0) BS01 rna ? GO:0000028 ... P0AG63 17660832
    79 4v55:CR (4.0) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    80 4v55:CS (4.0) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    81 4v55:CT (4.0) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    82 4v55:CU (4.0) BS01 rna ? GO:0000028 ... P68679 17660832
    83 4v55:D0 (4.0) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    84 4v55:D1 (4.0) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    85 4v55:D2 (4.0) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    86 4v55:D3 (4.0) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    87 4v55:D4 (4.0) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    88 4v55:D4 (4.0) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    89 4v55:D6 (4.0) BS01 rna ? GO:0005737 ... Q9WX76 17660832
    90 4v55:DC (4.0) BS01 rna ? GO:0000027 ... P60422 17660832
    91 4v55:DD (4.0) BS01 rna ? GO:0000027 ... P60438 17660832
    92 4v55:DE (4.0) BS01 rna ? GO:0001070 ... P60723 17660832
    93 4v55:DF (4.0) BS01 rna ? GO:0000027 ... P62399 17660832
    94 4v55:DF (4.0) BS02 rna ? GO:0000027 ... P62399 17660832
    95 4v55:DG (4.0) BS01 rna ? GO:0000027 ... P0AG55 17660832
    96 4v55:DH (4.0) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    97 4v55:DI (4.0) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    98 4v55:DJ (4.0) BS01 rna ? GO:0002181 ... P0AA10 17660832
    99 4v55:DK (4.0) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    100 4v55:DK (4.0) BS02 rna ? GO:0002181 ... P0ADY3 17660832
    101 4v55:DL (4.0) BS01 rna ? GO:0002181 ... P02413 17660832
    102 4v55:DM (4.0) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    103 4v55:DM (4.0) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    104 4v55:DN (4.0) BS01 rna ? GO:0000027 ... P0AG44 17660832
    105 4v55:DO (4.0) BS01 rna ? GO:0002181 ... P0C018 17660832
    106 4v55:DO (4.0) BS02 rna ? GO:0002181 ... P0C018 17660832
    107 4v55:DP (4.0) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    108 4v55:DP (4.0) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    109 4v55:DQ (4.0) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    110 4v55:DR (4.0) BS01 rna ? GO:0002181 ... P0AG48 17660832
    111 4v55:DS (4.0) BS01 rna ? GO:0002181 ... P61175 17660832
    112 4v55:DT (4.0) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    113 4v55:DU (4.0) BS01 rna ? GO:0000027 ... P60624 17660832
    114 4v55:DV (4.0) BS01 rna ? GO:0000027 ... P68919 17660832
    115 4v55:DW (4.0) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    116 4v55:DW (4.0) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    117 4v55:DX (4.0) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    118 4v55:DY (4.0) BS01 rna ? GO:0000027 ... P0AG51 17660832
    119 4v55:DY (4.0) BS02 rna ? GO:0000027 ... P0AG51 17660832
    120 4v55:DZ (4.0) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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