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BioLiP
Download all results in tab-seperated text for 119 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v52:AB (3.21) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    2 4v52:AC (3.21) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    3 4v52:AD (3.21) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    4 4v52:AE (3.21) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    5 4v52:AF (3.21) BS01 rna ? GO:0002181 ... P02358 17660832
    6 4v52:AG (3.21) BS01 rna ? GO:0000028 ... P02359 17660832
    7 4v52:AH (3.21) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    8 4v52:AI (3.21) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    9 4v52:AJ (3.21) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    10 4v52:AK (3.21) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    11 4v52:AL (3.21) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    12 4v52:AM (3.21) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    13 4v52:AN (3.21) BS01 rna ? GO:0000028 ... P0AG59 17660832
    14 4v52:AO (3.21) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    15 4v52:AO (3.21) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    16 4v52:AP (3.21) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    17 4v52:AQ (3.21) BS01 rna ? GO:0000028 ... P0AG63 17660832
    18 4v52:AR (3.21) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    19 4v52:AS (3.21) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    20 4v52:AT (3.21) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    21 4v52:AU (3.21) BS01 rna ? GO:0000028 ... P68679 17660832
    22 4v52:B0 (3.21) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    23 4v52:B1 (3.21) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    24 4v52:B2 (3.21) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    25 4v52:B3 (3.21) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    26 4v52:B4 (3.21) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    27 4v52:B4 (3.21) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    28 4v52:BC (3.21) BS01 rna ? GO:0000027 ... P60422 17660832
    29 4v52:BD (3.21) BS01 rna ? GO:0000027 ... P60438 17660832
    30 4v52:BE (3.21) BS01 rna ? GO:0001070 ... P60723 17660832
    31 4v52:BF (3.21) BS01 rna ? GO:0000027 ... P62399 17660832
    32 4v52:BF (3.21) BS02 rna ? GO:0000027 ... P62399 17660832
    33 4v52:BG (3.21) BS01 rna ? GO:0000027 ... P0AG55 17660832
    34 4v52:BH (3.21) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    35 4v52:BH (3.21) BS02 rna ? GO:0002181 ... P0A7R1 17660832
    36 4v52:BI (3.21) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    37 4v52:BJ (3.21) BS01 rna ? GO:0002181 ... P0AA10 17660832
    38 4v52:BK (3.21) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    39 4v52:BK (3.21) BS02 rna ? GO:0002181 ... P0ADY3 17660832
    40 4v52:BL (3.21) BS01 rna ? GO:0002181 ... P02413 17660832
    41 4v52:BM (3.21) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    42 4v52:BM (3.21) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    43 4v52:BN (3.21) BS01 rna ? GO:0000027 ... P0AG44 17660832
    44 4v52:BO (3.21) BS01 rna ? GO:0002181 ... P0C018 17660832
    45 4v52:BO (3.21) BS02 rna ? GO:0002181 ... P0C018 17660832
    46 4v52:BP (3.21) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    47 4v52:BP (3.21) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    48 4v52:BQ (3.21) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    49 4v52:BR (3.21) BS01 rna ? GO:0002181 ... P0AG48 17660832
    50 4v52:BS (3.21) BS01 rna ? GO:0002181 ... P61175 17660832
    51 4v52:BT (3.21) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    52 4v52:BU (3.21) BS01 rna ? GO:0000027 ... P60624 17660832
    53 4v52:BV (3.21) BS01 rna ? GO:0000027 ... P68919 17660832
    54 4v52:BV (3.21) BS02 rna ? GO:0000027 ... P68919 17660832
    55 4v52:BW (3.21) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    56 4v52:BW (3.21) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    57 4v52:BX (3.21) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    58 4v52:BY (3.21) BS01 rna ? GO:0000027 ... P0AG51 17660832
    59 4v52:BY (3.21) BS02 rna ? GO:0000027 ... P0AG51 17660832
    60 4v52:BZ (3.21) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    61 4v52:CB (3.21) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    62 4v52:CC (3.21) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    63 4v52:CD (3.21) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    64 4v52:CE (3.21) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    65 4v52:CF (3.21) BS01 rna ? GO:0002181 ... P02358 17660832
    66 4v52:CG (3.21) BS01 rna ? GO:0000028 ... P02359 17660832
    67 4v52:CH (3.21) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    68 4v52:CI (3.21) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    69 4v52:CJ (3.21) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    70 4v52:CJ (3.21) BS02 rna ? GO:0000049 ... P0A7R5 17660832
    71 4v52:CK (3.21) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    72 4v52:CL (3.21) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    73 4v52:CM (3.21) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    74 4v52:CN (3.21) BS01 rna ? GO:0000028 ... P0AG59 17660832
    75 4v52:CO (3.21) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    76 4v52:CO (3.21) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    77 4v52:CP (3.21) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    78 4v52:CQ (3.21) BS01 rna ? GO:0000028 ... P0AG63 17660832
    79 4v52:CR (3.21) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    80 4v52:CS (3.21) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    81 4v52:CT (3.21) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    82 4v52:CU (3.21) BS01 rna ? GO:0000028 ... P68679 17660832
    83 4v52:D0 (3.21) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    84 4v52:D1 (3.21) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    85 4v52:D2 (3.21) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    86 4v52:D3 (3.21) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    87 4v52:D4 (3.21) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    88 4v52:D4 (3.21) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    89 4v52:DC (3.21) BS01 rna ? GO:0000027 ... P60422 17660832
    90 4v52:DD (3.21) BS01 rna ? GO:0000027 ... P60438 17660832
    91 4v52:DE (3.21) BS01 rna ? GO:0001070 ... P60723 17660832
    92 4v52:DF (3.21) BS01 rna ? GO:0000027 ... P62399 17660832
    93 4v52:DF (3.21) BS02 rna ? GO:0000027 ... P62399 17660832
    94 4v52:DG (3.21) BS01 rna ? GO:0000027 ... P0AG55 17660832
    95 4v52:DH (3.21) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    96 4v52:DI (3.21) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    97 4v52:DJ (3.21) BS01 rna ? GO:0002181 ... P0AA10 17660832
    98 4v52:DK (3.21) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    99 4v52:DK (3.21) BS02 rna ? GO:0002181 ... P0ADY3 17660832
    100 4v52:DL (3.21) BS01 rna ? GO:0002181 ... P02413 17660832
    101 4v52:DM (3.21) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    102 4v52:DM (3.21) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    103 4v52:DN (3.21) BS01 rna ? GO:0000027 ... P0AG44 17660832
    104 4v52:DO (3.21) BS01 rna ? GO:0002181 ... P0C018 17660832
    105 4v52:DO (3.21) BS02 rna ? GO:0002181 ... P0C018 17660832
    106 4v52:DP (3.21) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    107 4v52:DP (3.21) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    108 4v52:DQ (3.21) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    109 4v52:DR (3.21) BS01 rna ? GO:0002181 ... P0AG48 17660832
    110 4v52:DS (3.21) BS01 rna ? GO:0002181 ... P61175 17660832
    111 4v52:DT (3.21) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    112 4v52:DU (3.21) BS01 rna ? GO:0000027 ... P60624 17660832
    113 4v52:DV (3.21) BS01 rna ? GO:0000027 ... P68919 17660832
    114 4v52:DW (3.21) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    115 4v52:DW (3.21) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    116 4v52:DX (3.21) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    117 4v52:DY (3.21) BS01 rna ? GO:0000027 ... P0AG51 17660832
    118 4v52:DY (3.21) BS02 rna ? GO:0000027 ... P0AG51 17660832
    119 4v52:DZ (3.21) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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