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BioLiP
Download all results in tab-seperated text for 134 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v51:AB (2.8) BS01 rna ? GO:0003735 ... P80371 16959973
    2 4v51:AC (2.8) BS01 rna ? GO:0003676 ... P80372 16959973
    3 4v51:AD (2.8) BS01 rna ? GO:0003723 ... P80373 16959973
    4 4v51:AD (2.8) BS02 ZN ? GO:0003723 ... P80373 16959973
    5 4v51:AE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 16959973
    6 4v51:AF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 16959973
    7 4v51:AG (2.8) BS01 rna ? GO:0000028 ... P17291 16959973
    8 4v51:AG (2.8) BS02 rna ? GO:0000028 ... P17291 16959973
    9 4v51:AH (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    10 4v51:AI (2.8) BS01 rna ? GO:0000049 ... P62669 16959973
    11 4v51:AJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 16959973
    12 4v51:AJ (2.8) BS02 rna ? GO:0000049 ... Q5SHN7 16959973
    13 4v51:AK (2.8) BS01 rna ? GO:0003735 ... P80376 16959973
    14 4v51:AL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 16959973
    15 4v51:AM (2.8) BS01 rna ? GO:0000049 ... P80377 16959973
    16 4v51:AM (2.8) BS02 rna ? GO:0000049 ... P80377 16959973
    17 4v51:AN (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    18 4v51:AN (2.8) BS02 ZN N/A GO:0003735 ... N/A 16959973
    19 4v51:AO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 16959973
    20 4v51:AO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 16959973
    21 4v51:AP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 16959973
    22 4v51:AQ (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    23 4v51:AR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 16959973
    24 4v51:AS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 16959973
    25 4v51:AT (2.8) BS01 rna ? GO:0003723 ... P80380 16959973
    26 4v51:B0 (2.8) BS01 rna ? GO:0003735 ... P60493 16959973
    27 4v51:B0 (2.8) BS02 rna ? GO:0003735 ... P60493 16959973
    28 4v51:B0 (2.8) BS03 rna ? GO:0003735 ... P60493 16959973
    29 4v51:B1 (2.8) BS01 rna ? GO:0003735 ... P60494 16959973
    30 4v51:B1 (2.8) BS02 MG ? GO:0003735 ... P60494 16959973
    31 4v51:B2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 16959973
    32 4v51:B2 (2.8) BS02 MG ? GO:0003735 ... Q5SHP6 16959973
    33 4v51:B3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 16959973
    34 4v51:B3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 16959973
    35 4v51:B4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 16959973
    36 4v51:B5 (2.8) BS01 rna ? GO:0003735 ... P80339 16959973
    37 4v51:B6 (2.8) BS01 rna ? GO:0000049 ... P35871 16959973
    38 4v51:B7 (2.8) BS01 rna ? GO:0003735 ... P80340 16959973
    39 4v51:B8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 16959973
    40 4v51:BC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 16959973
    41 4v51:BD (2.8) BS01 rna ? GO:0002181 ... P60405 16959973
    42 4v51:BD (2.8) BS02 rna ? GO:0002181 ... P60405 16959973
    43 4v51:BD (2.8) BS03 MG ? GO:0002181 ... P60405 16959973
    44 4v51:BE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 16959973
    45 4v51:BF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 16959973
    46 4v51:BF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 16959973
    47 4v51:BG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 16959973
    48 4v51:BG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 16959973
    49 4v51:BG (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 16959973
    50 4v51:BH (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    51 4v51:BI (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 16959973
    52 4v51:BN (2.8) BS01 rna ? GO:0003729 ... P60488 16959973
    53 4v51:BO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 16959973
    54 4v51:BO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 16959973
    55 4v51:BP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 16959973
    56 4v51:BQ (2.8) BS01 rna ? GO:0000049 ... P60489 16959973
    57 4v51:BR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 16959973
    58 4v51:BS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 16959973
    59 4v51:BS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 16959973
    60 4v51:BT (2.8) BS01 rna ? GO:0003735 ... P60490 16959973
    61 4v51:BT (2.8) BS02 rna ? GO:0003735 ... P60490 16959973
    62 4v51:BU (2.8) BS01 rna ? GO:0000027 ... P60491 16959973
    63 4v51:BV (2.8) BS01 rna ? GO:0003723 ... P60492 16959973
    64 4v51:BW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 16959973
    65 4v51:BX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 16959973
    66 4v51:BY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 16959973
    67 4v51:BZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 16959973
    68 4v51:BZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 16959973
    69 4v51:CB (2.8) BS01 rna ? GO:0003735 ... P80371 16959973
    70 4v51:CC (2.8) BS01 rna ? GO:0003676 ... P80372 16959973
    71 4v51:CD (2.8) BS01 rna ? GO:0003723 ... P80373 16959973
    72 4v51:CD (2.8) BS02 ZN ? GO:0003723 ... P80373 16959973
    73 4v51:CE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 16959973
    74 4v51:CF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 16959973
    75 4v51:CF (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 16959973
    76 4v51:CG (2.8) BS01 rna ? GO:0000028 ... P17291 16959973
    77 4v51:CG (2.8) BS02 rna ? GO:0000028 ... P17291 16959973
    78 4v51:CH (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    79 4v51:CI (2.8) BS01 rna ? GO:0000049 ... P62669 16959973
    80 4v51:CJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 16959973
    81 4v51:CK (2.8) BS01 rna ? GO:0003735 ... P80376 16959973
    82 4v51:CL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 16959973
    83 4v51:CM (2.8) BS01 rna ? GO:0000049 ... P80377 16959973
    84 4v51:CN (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    85 4v51:CN (2.8) BS02 ZN N/A GO:0003735 ... N/A 16959973
    86 4v51:CO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 16959973
    87 4v51:CO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 16959973
    88 4v51:CP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 16959973
    89 4v51:CQ (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    90 4v51:CR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 16959973
    91 4v51:CS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 16959973
    92 4v51:CT (2.8) BS01 rna ? GO:0003723 ... P80380 16959973
    93 4v51:D0 (2.8) BS01 rna ? GO:0003735 ... P60493 16959973
    94 4v51:D0 (2.8) BS02 rna ? GO:0003735 ... P60493 16959973
    95 4v51:D0 (2.8) BS03 rna ? GO:0003735 ... P60493 16959973
    96 4v51:D1 (2.8) BS01 rna ? GO:0003735 ... P60494 16959973
    97 4v51:D1 (2.8) BS02 rna ? GO:0003735 ... P60494 16959973
    98 4v51:D2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 16959973
    99 4v51:D3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 16959973
    100 4v51:D3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 16959973
    101 4v51:D5 (2.8) BS01 rna ? GO:0003735 ... P80339 16959973
    102 4v51:D6 (2.8) BS01 rna ? GO:0000049 ... P35871 16959973
    103 4v51:D7 (2.8) BS01 rna ? GO:0003735 ... P80340 16959973
    104 4v51:D8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 16959973
    105 4v51:DC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 16959973
    106 4v51:DD (2.8) BS01 rna ? GO:0002181 ... P60405 16959973
    107 4v51:DD (2.8) BS02 MG ? GO:0002181 ... P60405 16959973
    108 4v51:DE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 16959973
    109 4v51:DF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 16959973
    110 4v51:DF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 16959973
    111 4v51:DG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 16959973
    112 4v51:DG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 16959973
    113 4v51:DG (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 16959973
    114 4v51:DH (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    115 4v51:DI (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 16959973
    116 4v51:DI (2.8) BS02 rna ? GO:0003735 ... Q5SLQ1 16959973
    117 4v51:DN (2.8) BS01 rna ? GO:0003729 ... P60488 16959973
    118 4v51:DO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 16959973
    119 4v51:DO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 16959973
    120 4v51:DP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 16959973
    121 4v51:DQ (2.8) BS01 rna ? GO:0000049 ... P60489 16959973
    122 4v51:DR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 16959973
    123 4v51:DR (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 16959973
    124 4v51:DS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 16959973
    125 4v51:DS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 16959973
    126 4v51:DS (2.8) BS03 MG ? GO:0003735 ... Q5SHQ4 16959973
    127 4v51:DT (2.8) BS01 rna ? GO:0003735 ... P60490 16959973
    128 4v51:DT (2.8) BS02 rna ? GO:0003735 ... P60490 16959973
    129 4v51:DU (2.8) BS01 rna ? GO:0000027 ... P60491 16959973
    130 4v51:DV (2.8) BS01 rna ? GO:0003723 ... P60492 16959973
    131 4v51:DW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 16959973
    132 4v51:DX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 16959973
    133 4v51:DY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 16959973
    134 4v51:DZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 16959973
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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