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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v4r:AB (5.9) BS01 rna ? GO:0003735 ... P80371 16377566
    2 4v4r:AC (5.9) BS01 rna ? GO:0003676 ... P80372 16377566
    3 4v4r:AD (5.9) BS01 rna ? GO:0003723 ... P80373 16377566
    4 4v4r:AE (5.9) BS01 rna ? GO:0003723 ... Q5SHQ5 16377566
    5 4v4r:AF (5.9) BS01 rna ? GO:0003735 ... Q5SLP8 16377566
    6 4v4r:AG (5.9) BS01 rna ? GO:0000028 ... P17291 16377566
    7 4v4r:AG (5.9) BS02 rna ? GO:0000028 ... P17291 16377566
    8 4v4r:AH (5.9) BS01 rna ? GO:0003735 ... P0DOY9 16377566
    9 4v4r:AI (5.9) BS01 rna ? GO:0000049 ... P80374 16377566
    10 4v4r:AI (5.9) BS02 rna ? GO:0000049 ... P80374 16377566
    11 4v4r:AJ (5.9) BS01 rna ? GO:0000049 ... Q5SHN7 16377566
    12 4v4r:AK (5.9) BS01 rna ? GO:0003735 ... P80376 16377566
    13 4v4r:AL (5.9) BS01 rna ? GO:0000049 ... Q5SHN3 16377566
    14 4v4r:AM (5.9) BS01 rna ? GO:0000049 ... P80377 16377566
    15 4v4r:AM (5.9) BS02 rna ? GO:0000049 ... P80377 16377566
    16 4v4r:AN (5.9) BS01 rna ? GO:0003735 ... P0DOY6 16377566
    17 4v4r:AO (5.9) BS01 rna ? GO:0003735 ... Q5SJ76 16377566
    18 4v4r:AP (5.9) BS01 rna ? GO:0003735 ... Q5SJH3 16377566
    19 4v4r:AQ (5.9) BS01 rna ? GO:0003735 ... P0DOY7 16377566
    20 4v4r:AR (5.9) BS01 rna ? GO:0003735 ... Q5SLQ0 16377566
    21 4v4r:AS (5.9) BS01 rna ? GO:0000028 ... Q5SHP2 16377566
    22 4v4r:AT (5.9) BS01 rna ? GO:0003723 ... P80380 16377566
    23 4v4r:AY (5.9) BS01 rna ? GO:0003747 ... P96077 16377566
    24 4v4r:AY (5.9) BS02 rna ? GO:0003747 ... P96077 16377566
    25 4v4r:AY (5.9) BS03 rna ? GO:0003747 ... P96077 16377566
    26 4v4r:B0 (5.9) BS01 rna ? GO:0000049 ... Q9RY65 16377566
    27 4v4r:B0 (5.9) BS02 rna ? GO:0000049 ... Q9RY65 16377566
    28 4v4r:B2 (5.9) BS01 rna ? GO:0003735 ... P10971 16377566
    29 4v4r:B3 (5.9) BS01 rna ? GO:0003735 ... Q5SHQ6 16377566
    30 4v4r:B3 (5.9) BS02 rna ? GO:0003735 ... Q5SHQ6 16377566
    31 4v4r:B4 (5.9) BS01 rna ? GO:0000049 ... Q9RW44 16377566
    32 4v4r:B4 (5.9) BS02 rna ? GO:0000049 ... Q9RW44 16377566
    33 4v4r:B5 (5.9) BS01 rna ? GO:0003735 ... P49228 16377566
    34 4v4r:B6 (5.9) BS01 rna ? GO:0000049 ... Q9RSS4 16377566
    35 4v4r:B7 (5.9) BS01 rna ? GO:0003735 ... Q9RSH2 16377566
    36 4v4r:B8 (5.9) BS01 rna ? GO:0003735 ... Q9RSW6 16377566
    37 4v4r:B8 (5.9) BS02 rna ? GO:0003735 ... Q9RSW6 16377566
    38 4v4r:B9 (5.9) BS01 rna ? GO:0003735 ... Q9RSK0 16377566
    39 4v4r:BD (5.9) BS01 rna ? GO:0003723 ... Q5L3Z4 16377566
    40 4v4r:BE (5.9) BS01 rna ? GO:0003723 ... P20279 16377566
    41 4v4r:BF (5.9) BS01 rna ? GO:0003723 ... P12735 16377566
    42 4v4r:BG (5.9) BS01 rna ? GO:0000049 ... P14124 16377566
    43 4v4r:BG (5.9) BS02 rna ? GO:0000049 ... P14124 16377566
    44 4v4r:BH (5.9) BS01 rna ? GO:0002181 ... Q5L408 16377566
    45 4v4r:BI (5.9) BS01 rna ? GO:0003735 ... P02417 16377566
    46 4v4r:BK (5.9) BS01 rna ? GO:0003735 ... P29395 16377566
    47 4v4r:BN (5.9) BS01 rna ? GO:0003729 ... P29198 16377566
    48 4v4r:BO (5.9) BS01 rna ? GO:0003735 ... Q5L413 16377566
    49 4v4r:BO (5.9) BS02 rna ? GO:0003735 ... Q5L413 16377566
    50 4v4r:BP (5.9) BS01 rna ? GO:0003735 ... P12737 16377566
    51 4v4r:BQ (5.9) BS01 rna N/A GO:0003735 ... N/A 16377566
    52 4v4r:BQ (5.9) BS02 rna N/A GO:0003735 ... N/A 16377566
    53 4v4r:BQ (5.9) BS03 rna N/A GO:0003735 ... N/A 16377566
    54 4v4r:BR (5.9) BS01 rna ? GO:0003735 ... Q9Z9H5 16377566
    55 4v4r:BS (5.9) BS01 rna ? GO:0000027 ... P14123 16377566
    56 4v4r:BS (5.9) BS02 rna ? GO:0000027 ... P14123 16377566
    57 4v4r:BT (5.9) BS01 rna ? GO:0003735 ... P14116 16377566
    58 4v4r:BT (5.9) BS02 rna ? GO:0003735 ... P14116 16377566
    59 4v4r:BU (5.9) BS01 rna ? GO:0000027 ... Q9RSW7 16377566
    60 4v4r:BV (5.9) BS01 rna ? GO:0003723 ... Q9RY64 16377566
    61 4v4r:BW (5.9) BS01 rna ? GO:0003735 ... Q5SHP3 16377566
    62 4v4r:BX (5.9) BS01 rna ? GO:0000027 ... P12732 16377566
    63 4v4r:BY (5.9) BS01 rna ? GO:0002181 ... P10972 16377566
    64 4v4r:BZ (5.9) BS01 rna ? GO:0000049 ... Q9RX88 16377566
    65 4v4r:BZ (5.9) BS02 rna ? GO:0000049 ... Q9RX88 16377566
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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