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BioLiP
Download all results in tab-seperated text for 117 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v4q:AB (3.46) BS01 rna ? GO:0000028 ... P0A7V0 16272117
    2 4v4q:AC (3.46) BS01 rna ? GO:0000028 ... P0A7V3 16272117
    3 4v4q:AD (3.46) BS01 rna ? GO:0000028 ... P0A7V8 16272117
    4 4v4q:AE (3.46) BS01 rna ? GO:0000028 ... P0A7W1 16272117
    5 4v4q:AF (3.46) BS01 rna ? GO:0002181 ... P02358 16272117
    6 4v4q:AG (3.46) BS01 rna ? GO:0000028 ... P02359 16272117
    7 4v4q:AH (3.46) BS01 rna ? GO:0000028 ... P0A7W7 16272117
    8 4v4q:AI (3.46) BS01 rna ? GO:0000049 ... P0A7X3 16272117
    9 4v4q:AJ (3.46) BS01 rna ? GO:0000049 ... P0A7R5 16272117
    10 4v4q:AK (3.46) BS01 rna ? GO:0002181 ... P0A7R9 16272117
    11 4v4q:AK (3.46) BS02 rna ? GO:0002181 ... P0A7R9 16272117
    12 4v4q:AL (3.46) BS01 rna ? GO:0000049 ... P0A7S3 16272117
    13 4v4q:AM (3.46) BS01 rna ? GO:0000049 ... P0A7S9 16272117
    14 4v4q:AN (3.46) BS01 rna ? GO:0000028 ... P0AG59 16272117
    15 4v4q:AO (3.46) BS01 rna ? GO:0000028 ... P0ADZ4 16272117
    16 4v4q:AO (3.46) BS02 rna ? GO:0000028 ... P0ADZ4 16272117
    17 4v4q:AP (3.46) BS01 rna ? GO:0000028 ... P0A7T3 16272117
    18 4v4q:AQ (3.46) BS01 rna ? GO:0000028 ... P0AG63 16272117
    19 4v4q:AR (3.46) BS01 rna ? GO:0002181 ... P0A7T7 16272117
    20 4v4q:AS (3.46) BS01 rna ? GO:0000028 ... P0A7U3 16272117
    21 4v4q:AT (3.46) BS01 rna ? GO:0000028 ... P0A7U7 16272117
    22 4v4q:AU (3.46) BS01 rna ? GO:0000028 ... P68679 16272117
    23 4v4q:B0 (3.46) BS01 rna ? GO:0000027 ... P0A7N4 16272117
    24 4v4q:B1 (3.46) BS01 rna ? GO:0000027 ... P0A7N9 16272117
    25 4v4q:B2 (3.46) BS01 rna ? GO:0002181 ... P0A7P5 16272117
    26 4v4q:B3 (3.46) BS01 rna ? GO:0002181 ... P0A7Q1 16272117
    27 4v4q:B4 (3.46) BS01 rna ? GO:0002181 ... P0A7Q6 16272117
    28 4v4q:BC (3.46) BS01 rna ? GO:0000027 ... P60422 16272117
    29 4v4q:BD (3.46) BS01 rna ? GO:0000027 ... P60438 16272117
    30 4v4q:BE (3.46) BS01 rna ? GO:0001070 ... P60723 16272117
    31 4v4q:BF (3.46) BS01 rna ? GO:0000027 ... P62399 16272117
    32 4v4q:BF (3.46) BS02 rna ? GO:0000027 ... P62399 16272117
    33 4v4q:BG (3.46) BS01 rna ? GO:0000027 ... P0AG55 16272117
    34 4v4q:BH (3.46) BS01 rna ? GO:0002181 ... P0A7R1 16272117
    35 4v4q:BH (3.46) BS02 rna ? GO:0002181 ... P0A7R1 16272117
    36 4v4q:BI (3.46) BS01 rna ? GO:0000027 ... P0A7J7 16272117
    37 4v4q:BJ (3.46) BS01 rna ? GO:0002181 ... P0AA10 16272117
    38 4v4q:BK (3.46) BS01 rna ? GO:0002181 ... P0ADY3 16272117
    39 4v4q:BK (3.46) BS02 rna ? GO:0002181 ... P0ADY3 16272117
    40 4v4q:BL (3.46) BS01 rna ? GO:0002181 ... P02413 16272117
    41 4v4q:BM (3.46) BS01 rna ? GO:0000027 ... P0ADY7 16272117
    42 4v4q:BM (3.46) BS02 rna ? GO:0000027 ... P0ADY7 16272117
    43 4v4q:BN (3.46) BS01 rna ? GO:0000027 ... P0AG44 16272117
    44 4v4q:BO (3.46) BS01 rna ? GO:0002181 ... P0C018 16272117
    45 4v4q:BO (3.46) BS02 rna ? GO:0002181 ... P0C018 16272117
    46 4v4q:BP (3.46) BS01 rna ? GO:0000027 ... P0A7K6 16272117
    47 4v4q:BP (3.46) BS02 rna ? GO:0000027 ... P0A7K6 16272117
    48 4v4q:BQ (3.46) BS01 rna ? GO:0000027 ... P0A7L3 16272117
    49 4v4q:BR (3.46) BS01 rna ? GO:0002181 ... P0AG48 16272117
    50 4v4q:BS (3.46) BS01 rna ? GO:0002181 ... P61175 16272117
    51 4v4q:BT (3.46) BS01 rna ? GO:0000027 ... P0ADZ0 16272117
    52 4v4q:BU (3.46) BS01 rna ? GO:0000027 ... P60624 16272117
    53 4v4q:BV (3.46) BS01 rna ? GO:0000027 ... P68919 16272117
    54 4v4q:BV (3.46) BS02 rna ? GO:0000027 ... P68919 16272117
    55 4v4q:BW (3.46) BS01 rna ? GO:0000027 ... P0A7L8 16272117
    56 4v4q:BW (3.46) BS02 rna ? GO:0000027 ... P0A7L8 16272117
    57 4v4q:BX (3.46) BS01 rna ? GO:0000027 ... P0A7M6 16272117
    58 4v4q:BY (3.46) BS01 rna ? GO:0000027 ... P0AG51 16272117
    59 4v4q:BY (3.46) BS02 rna ? GO:0000027 ... P0AG51 16272117
    60 4v4q:BZ (3.46) BS01 rna ? GO:0002181 ... P0A7M9 16272117
    61 4v4q:CB (3.46) BS01 rna ? GO:0000028 ... P0A7V0 16272117
    62 4v4q:CC (3.46) BS01 rna ? GO:0000028 ... P0A7V3 16272117
    63 4v4q:CD (3.46) BS01 rna ? GO:0000028 ... P0A7V8 16272117
    64 4v4q:CE (3.46) BS01 rna ? GO:0000028 ... P0A7W1 16272117
    65 4v4q:CF (3.46) BS01 rna ? GO:0002181 ... P02358 16272117
    66 4v4q:CG (3.46) BS01 rna ? GO:0000028 ... P02359 16272117
    67 4v4q:CH (3.46) BS01 rna ? GO:0000028 ... P0A7W7 16272117
    68 4v4q:CI (3.46) BS01 rna ? GO:0000049 ... P0A7X3 16272117
    69 4v4q:CJ (3.46) BS01 rna ? GO:0000049 ... P0A7R5 16272117
    70 4v4q:CJ (3.46) BS02 rna ? GO:0000049 ... P0A7R5 16272117
    71 4v4q:CK (3.46) BS01 rna ? GO:0002181 ... P0A7R9 16272117
    72 4v4q:CL (3.46) BS01 rna ? GO:0000049 ... P0A7S3 16272117
    73 4v4q:CM (3.46) BS01 rna ? GO:0000049 ... P0A7S9 16272117
    74 4v4q:CN (3.46) BS01 rna ? GO:0000028 ... P0AG59 16272117
    75 4v4q:CO (3.46) BS01 rna ? GO:0000028 ... P0ADZ4 16272117
    76 4v4q:CO (3.46) BS02 rna ? GO:0000028 ... P0ADZ4 16272117
    77 4v4q:CP (3.46) BS01 rna ? GO:0000028 ... P0A7T3 16272117
    78 4v4q:CQ (3.46) BS01 rna ? GO:0000028 ... P0AG63 16272117
    79 4v4q:CR (3.46) BS01 rna ? GO:0002181 ... P0A7T7 16272117
    80 4v4q:CS (3.46) BS01 rna ? GO:0000028 ... P0A7U3 16272117
    81 4v4q:CT (3.46) BS01 rna ? GO:0000028 ... P0A7U7 16272117
    82 4v4q:CU (3.46) BS01 rna ? GO:0000028 ... P68679 16272117
    83 4v4q:D0 (3.46) BS01 rna ? GO:0000027 ... P0A7N4 16272117
    84 4v4q:D1 (3.46) BS01 rna ? GO:0000027 ... P0A7N9 16272117
    85 4v4q:D2 (3.46) BS01 rna ? GO:0002181 ... P0A7P5 16272117
    86 4v4q:D3 (3.46) BS01 rna ? GO:0002181 ... P0A7Q1 16272117
    87 4v4q:D4 (3.46) BS01 rna ? GO:0002181 ... P0A7Q6 16272117
    88 4v4q:DC (3.46) BS01 rna ? GO:0000027 ... P60422 16272117
    89 4v4q:DD (3.46) BS01 rna ? GO:0000027 ... P60438 16272117
    90 4v4q:DE (3.46) BS01 rna ? GO:0001070 ... P60723 16272117
    91 4v4q:DF (3.46) BS01 rna ? GO:0000027 ... P62399 16272117
    92 4v4q:DF (3.46) BS02 rna ? GO:0000027 ... P62399 16272117
    93 4v4q:DG (3.46) BS01 rna ? GO:0000027 ... P0AG55 16272117
    94 4v4q:DH (3.46) BS01 rna ? GO:0002181 ... P0A7R1 16272117
    95 4v4q:DI (3.46) BS01 rna ? GO:0000027 ... P0A7J7 16272117
    96 4v4q:DJ (3.46) BS01 rna ? GO:0002181 ... P0AA10 16272117
    97 4v4q:DK (3.46) BS01 rna ? GO:0002181 ... P0ADY3 16272117
    98 4v4q:DK (3.46) BS02 rna ? GO:0002181 ... P0ADY3 16272117
    99 4v4q:DL (3.46) BS01 rna ? GO:0002181 ... P02413 16272117
    100 4v4q:DM (3.46) BS01 rna ? GO:0000027 ... P0ADY7 16272117
    101 4v4q:DN (3.46) BS01 rna ? GO:0000027 ... P0AG44 16272117
    102 4v4q:DO (3.46) BS01 rna ? GO:0002181 ... P0C018 16272117
    103 4v4q:DO (3.46) BS02 rna ? GO:0002181 ... P0C018 16272117
    104 4v4q:DP (3.46) BS01 rna ? GO:0000027 ... P0A7K6 16272117
    105 4v4q:DP (3.46) BS02 rna ? GO:0000027 ... P0A7K6 16272117
    106 4v4q:DQ (3.46) BS01 rna ? GO:0000027 ... P0A7L3 16272117
    107 4v4q:DR (3.46) BS01 rna ? GO:0002181 ... P0AG48 16272117
    108 4v4q:DS (3.46) BS01 rna ? GO:0002181 ... P61175 16272117
    109 4v4q:DT (3.46) BS01 rna ? GO:0000027 ... P0ADZ0 16272117
    110 4v4q:DU (3.46) BS01 rna ? GO:0000027 ... P60624 16272117
    111 4v4q:DV (3.46) BS01 rna ? GO:0000027 ... P68919 16272117
    112 4v4q:DV (3.46) BS02 rna ? GO:0000027 ... P68919 16272117
    113 4v4q:DW (3.46) BS01 rna ? GO:0000027 ... P0A7L8 16272117
    114 4v4q:DX (3.46) BS01 rna ? GO:0000027 ... P0A7M6 16272117
    115 4v4q:DY (3.46) BS01 rna ? GO:0000027 ... P0AG51 16272117
    116 4v4q:DY (3.46) BS02 rna ? GO:0000027 ... P0AG51 16272117
    117 4v4q:DZ (3.46) BS01 rna ? GO:0002181 ... P0A7M9 16272117
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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