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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v4i:A (3.71) BS01 rna ? GO:0000049 ... Q5SLP7 16962654
    2 4v4i:A (3.71) BS02 rna ? GO:0000049 ... Q5SLP7 16962654
    3 4v4i:B (3.71) BS01 rna ? GO:0002181 ... P60405 16962654
    4 4v4i:B (3.71) BS02 rna ? GO:0002181 ... P60405 16962654
    5 4v4i:C (3.71) BS01 rna ? GO:0003735 ... Q5SHN8 16962654
    6 4v4i:D (3.71) BS01 rna ? GO:0003735 ... Q5SHN9 16962654
    7 4v4i:E (3.71) BS01 rna ? GO:0000049 ... Q5SHQ0 16962654
    8 4v4i:E (3.71) BS02 rna ? GO:0000049 ... Q5SHQ0 16962654
    9 4v4i:E (3.71) BS03 rna ? GO:0000049 ... Q5SHQ0 16962654
    10 4v4i:F (3.71) BS01 rna ? GO:0002181 ... P0DOY8 16962654
    11 4v4i:G (3.71) BS01 rna ? GO:0003735 ... Q5SLQ1 16962654
    12 4v4i:H (3.71) BS01 rna ? GO:0003729 ... P60488 16962654
    13 4v4i:I (3.71) BS01 rna ? GO:0003735 ... Q5SHP8 16962654
    14 4v4i:I (3.71) BS02 rna ? GO:0003735 ... Q5SHP8 16962654
    15 4v4i:J (3.71) BS01 rna ? GO:0003735 ... Q5SHQ7 16962654
    16 4v4i:K (3.71) BS01 rna ? GO:0000049 ... P60489 16962654
    17 4v4i:L (3.71) BS01 rna ? GO:0003735 ... Q9Z9H5 16962654
    18 4v4i:M (3.71) BS01 rna ? GO:0003735 ... Q5SHQ4 16962654
    19 4v4i:M (3.71) BS02 rna ? GO:0003735 ... Q5SHQ4 16962654
    20 4v4i:N (3.71) BS01 rna ? GO:0003735 ... P60490 16962654
    21 4v4i:N (3.71) BS02 rna ? GO:0003735 ... P60490 16962654
    22 4v4i:O (3.71) BS01 rna ? GO:0000027 ... P60491 16962654
    23 4v4i:P (3.71) BS01 rna ? GO:0003723 ... P60492 16962654
    24 4v4i:Q (3.71) BS01 rna ? GO:0003735 ... Q5SHP3 16962654
    25 4v4i:R (3.71) BS01 rna ? GO:0000027 ... Q5SHP0 16962654
    26 4v4i:S (3.71) BS01 rna ? GO:0003723 ... Q5SHP9 16962654
    27 4v4i:T (3.71) BS01 rna ? GO:0003723 ... Q5SHZ1 16962654
    28 4v4i:T (3.71) BS02 rna ? GO:0003723 ... Q5SHZ1 16962654
    29 4v4i:U (3.71) BS01 rna ? GO:0003735 ... P60493 16962654
    30 4v4i:U (3.71) BS02 rna ? GO:0003735 ... P60493 16962654
    31 4v4i:V (3.71) BS01 rna ? GO:0003735 ... P60494 16962654
    32 4v4i:V (3.71) BS02 rna ? GO:0003735 ... P60494 16962654
    33 4v4i:W (3.71) BS01 rna ? GO:0003735 ... Q5SHP6 16962654
    34 4v4i:X (3.71) BS01 rna ? GO:0003735 ... Q5SHQ6 16962654
    35 4v4i:X (3.71) BS02 rna ? GO:0003735 ... Q5SHQ6 16962654
    36 4v4i:Y (3.71) BS01 rna ? GO:0003735 ... P80339 16962654
    37 4v4i:Z (3.71) BS01 rna ? GO:0003735 ... P80340 16962654
    38 4v4i:a (3.71) BS01 rna ? GO:0003735 ... Q5SKU1 16962654
    39 4v4i:b (3.71) BS01 rna ? GO:0003735 ... Q5SHR2 16962654
    40 4v4i:c (3.71) BS01 rna ? GO:0003735 ... P80371 16962654
    41 4v4i:d (3.71) BS01 rna ? GO:0003676 ... P80372 16962654
    42 4v4i:e (3.71) BS01 rna ? GO:0003723 ... P80373 16962654
    43 4v4i:f (3.71) BS01 rna ? GO:0003723 ... Q5SHQ5 16962654
    44 4v4i:g (3.71) BS01 rna ? GO:0003735 ... Q5SLP8 16962654
    45 4v4i:h (3.71) BS01 rna ? GO:0000028 ... P17291 16962654
    46 4v4i:h (3.71) BS02 rna ? GO:0000028 ... P17291 16962654
    47 4v4i:h (3.71) BS03 rna ? GO:0000028 ... P17291 16962654
    48 4v4i:i (3.71) BS01 rna ? GO:0003735 ... P0DOY9 16962654
    49 4v4i:j (3.71) BS01 rna ? GO:0000049 ... P80374 16962654
    50 4v4i:k (3.71) BS01 rna ? GO:0000049 ... Q5SHN7 16962654
    51 4v4i:l (3.71) BS01 rna ? GO:0003735 ... P80376 16962654
    52 4v4i:m (3.71) BS01 rna ? GO:0000049 ... Q5SHN3 16962654
    53 4v4i:n (3.71) BS01 rna ? GO:0000049 ... P80377 16962654
    54 4v4i:n (3.71) BS02 rna ? GO:0000049 ... P80377 16962654
    55 4v4i:o (3.71) BS01 rna ? GO:0003735 ... P0DOY6 16962654
    56 4v4i:p (3.71) BS01 rna ? GO:0003735 ... Q5SJ76 16962654
    57 4v4i:p (3.71) BS02 rna ? GO:0003735 ... Q5SJ76 16962654
    58 4v4i:q (3.71) BS01 rna ? GO:0003735 ... Q5SJH3 16962654
    59 4v4i:r (3.71) BS01 rna ? GO:0003735 ... P0DOY7 16962654
    60 4v4i:s (3.71) BS01 rna ? GO:0003735 ... Q5SLQ0 16962654
    61 4v4i:t (3.71) BS01 rna ? GO:0000028 ... Q5SHP2 16962654
    62 4v4i:u (3.71) BS01 rna ? GO:0003723 ... P80380 16962654
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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