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BioLiP
Download all results in tab-seperated text for 106 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ujc:AB (9.5) BS01 rna ? GO:0003924 ... G1TRL5 25064512
    2 4ujc:AB (9.5) BS02 rna ? GO:0003924 ... G1TRL5 25064512
    3 4ujc:AB (9.5) BS03 rna ? GO:0003924 ... G1TRL5 25064512
    4 4ujc:AB (9.5) BS04 GNP ? GO:0003924 ... G1TRL5 25064512
    5 4ujc:BA (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    6 4ujc:BB (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    7 4ujc:BC (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    8 4ujc:BC (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    9 4ujc:BD (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    10 4ujc:BD (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    11 4ujc:BE (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    12 4ujc:BF (9.5) BS01 rna N/A GO:0000463 ... N/A 25064512
    13 4ujc:BF (9.5) BS02 rna N/A GO:0000463 ... N/A 25064512
    14 4ujc:BG (9.5) BS01 rna N/A GO:0042254 ... N/A 25064512
    15 4ujc:BG (9.5) BS02 rna N/A GO:0042254 ... N/A 25064512
    16 4ujc:BH (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    17 4ujc:BI (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    18 4ujc:BI (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    19 4ujc:BI (9.5) BS03 rna N/A GO:0003735 ... N/A 25064512
    20 4ujc:BJ (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    21 4ujc:BJ (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    22 4ujc:BJ (9.5) BS03 rna N/A GO:0003735 ... N/A 25064512
    23 4ujc:BL (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    24 4ujc:BL (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    25 4ujc:BM (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    26 4ujc:BN (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    27 4ujc:BN (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    28 4ujc:BO (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    29 4ujc:BP (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    30 4ujc:BP (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    31 4ujc:BQ (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    32 4ujc:BR (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    33 4ujc:BR (9.5) BS02 rna N/A GO:0003723 ... N/A 25064512
    34 4ujc:BS (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    35 4ujc:BS (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    36 4ujc:BT (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    37 4ujc:BT (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    38 4ujc:BU (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    39 4ujc:BV (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    40 4ujc:BW (9.5) BS01 rna N/A N/A N/A 25064512
    41 4ujc:BX (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    42 4ujc:BX (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    43 4ujc:BY (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    44 4ujc:BY (9.5) BS02 rna N/A GO:0003723 ... N/A 25064512
    45 4ujc:BZ (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    46 4ujc:Ba (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    47 4ujc:Bb (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    48 4ujc:Bc (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    49 4ujc:Bd (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    50 4ujc:Be (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    51 4ujc:Bf (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    52 4ujc:Bg (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    53 4ujc:Bh (9.5) BS01 rna N/A GO:0000463 ... N/A 25064512
    54 4ujc:Bh (9.5) BS02 rna N/A GO:0000463 ... N/A 25064512
    55 4ujc:Bi (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    56 4ujc:Bj (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    57 4ujc:Bj (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    58 4ujc:Bk (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    59 4ujc:Bl (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    60 4ujc:Bl (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    61 4ujc:Bm (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    62 4ujc:Bo (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    63 4ujc:Bo (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    64 4ujc:Bp (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    65 4ujc:Bt (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    66 4ujc:Bu (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    67 4ujc:CA (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    68 4ujc:CB (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    69 4ujc:CC (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    70 4ujc:CC (9.5) BS02 rna N/A GO:0003723 ... N/A 25064512
    71 4ujc:CD (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    72 4ujc:CE (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    73 4ujc:CF (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    74 4ujc:CF (9.5) BS02 rna N/A GO:0003723 ... N/A 25064512
    75 4ujc:CG (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    76 4ujc:CH (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    77 4ujc:CI (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    78 4ujc:CI (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    79 4ujc:CJ (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    80 4ujc:CK (9.5) BS01 rna N/A N/A N/A 25064512
    81 4ujc:CL (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    82 4ujc:CM (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    83 4ujc:CN (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    84 4ujc:CO (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    85 4ujc:CO (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    86 4ujc:CP (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    87 4ujc:CQ (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    88 4ujc:CQ (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    89 4ujc:CR (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    90 4ujc:CS (9.5) BS01 rna N/A GO:0003676 ... N/A 25064512
    91 4ujc:CT (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    92 4ujc:CU (9.5) BS01 rna N/A GO:0003723 ... N/A 25064512
    93 4ujc:CW (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    94 4ujc:CX (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    95 4ujc:CY (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    96 4ujc:CZ (9.5) BS01 rna N/A N/A N/A 25064512
    97 4ujc:Ca (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    98 4ujc:Ca (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    99 4ujc:Cb (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    100 4ujc:Cb (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    101 4ujc:Cc (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    102 4ujc:Cc (9.5) BS02 rna N/A GO:0003735 ... N/A 25064512
    103 4ujc:Cd (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    104 4ujc:Ce (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    105 4ujc:Cf (9.5) BS01 rna N/A GO:0003735 ... N/A 25064512
    106 4ujc:Cg (9.5) BS01 rna N/A GO:0043022 ... N/A 25064512
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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