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BioLiP
Download all results in tab-seperated text for 122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4u27:AB (2.8) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    2 4u27:AC (2.8) BS01 rna ? GO:0003676 ... P0A7V3 24957822
    3 4u27:AD (2.8) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    4 4u27:AE (2.8) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    5 4u27:AF (2.8) BS01 rna ? GO:0003735 ... P02358 24957822
    6 4u27:AG (2.8) BS01 rna ? GO:0003723 ... P02359 24957822
    7 4u27:AH (2.8) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    8 4u27:AI (2.8) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    9 4u27:AJ (2.8) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    10 4u27:AK (2.8) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    11 4u27:AK (2.8) BS02 rna ? GO:0002181 ... P0A7R9 24957822
    12 4u27:AL (2.8) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    13 4u27:AM (2.8) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    14 4u27:AN (2.8) BS01 rna ? GO:0000028 ... P0AG59 24957822
    15 4u27:AO (2.8) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    16 4u27:AO (2.8) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    17 4u27:AP (2.8) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    18 4u27:AQ (2.8) BS01 rna ? GO:0000028 ... P0AG63 24957822
    19 4u27:AR (2.8) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    20 4u27:AS (2.8) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    21 4u27:AT (2.8) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    22 4u27:AU (2.8) BS01 rna ? GO:0003735 ... P68679 24957822
    23 4u27:B0 (2.8) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    24 4u27:B1 (2.8) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    25 4u27:B2 (2.8) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    26 4u27:B3 (2.8) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    27 4u27:B4 (2.8) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    28 4u27:B4 (2.8) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    29 4u27:B5 (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 24957822
    30 4u27:BC (2.8) BS01 rna ? GO:0000027 ... P60422 24957822
    31 4u27:BC (2.8) BS02 MG ? GO:0000027 ... P60422 24957822
    32 4u27:BD (2.8) BS01 rna ? GO:0000027 ... P60438 24957822
    33 4u27:BE (2.8) BS01 rna ? GO:0001070 ... P60723 24957822
    34 4u27:BF (2.8) BS01 rna ? GO:0000027 ... P62399 24957822
    35 4u27:BF (2.8) BS02 rna ? GO:0000027 ... P62399 24957822
    36 4u27:BG (2.8) BS01 rna ? GO:0000027 ... P0AG55 24957822
    37 4u27:BH (2.8) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    38 4u27:BH (2.8) BS02 rna ? GO:0002181 ... P0A7R1 24957822
    39 4u27:BI (2.8) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    40 4u27:BJ (2.8) BS01 rna ? GO:0002181 ... P0AA10 24957822
    41 4u27:BK (2.8) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    42 4u27:BK (2.8) BS02 rna ? GO:0002181 ... P0ADY3 24957822
    43 4u27:BL (2.8) BS01 rna ? GO:0002181 ... P02413 24957822
    44 4u27:BM (2.8) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    45 4u27:BM (2.8) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    46 4u27:BN (2.8) BS01 rna ? GO:0000027 ... P0AG44 24957822
    47 4u27:BO (2.8) BS01 rna ? GO:0002181 ... P0C018 24957822
    48 4u27:BO (2.8) BS02 rna ? GO:0002181 ... P0C018 24957822
    49 4u27:BP (2.8) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    50 4u27:BP (2.8) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    51 4u27:BQ (2.8) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    52 4u27:BR (2.8) BS01 rna ? GO:0002181 ... P0AG48 24957822
    53 4u27:BS (2.8) BS01 rna ? GO:0002181 ... P61175 24957822
    54 4u27:BT (2.8) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    55 4u27:BU (2.8) BS01 rna ? GO:0000027 ... P60624 24957822
    56 4u27:BV (2.8) BS01 rna ? GO:0000027 ... P68919 24957822
    57 4u27:BV (2.8) BS02 rna ? GO:0000027 ... P68919 24957822
    58 4u27:BW (2.8) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    59 4u27:BW (2.8) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    60 4u27:BX (2.8) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    61 4u27:BY (2.8) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    62 4u27:BZ (2.8) BS01 rna ? GO:0000027 ... P0AG51 24957822
    63 4u27:BZ (2.8) BS02 rna ? GO:0000027 ... P0AG51 24957822
    64 4u27:CB (2.8) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    65 4u27:CB (2.8) BS02 rna ? GO:0000028 ... P0A7V0 24957822
    66 4u27:CC (2.8) BS01 rna ? GO:0003676 ... P0A7V3 24957822
    67 4u27:CD (2.8) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    68 4u27:CD (2.8) BS02 rna ? GO:0000028 ... P0A7V8 24957822
    69 4u27:CE (2.8) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    70 4u27:CF (2.8) BS01 rna ? GO:0003735 ... P02358 24957822
    71 4u27:CG (2.8) BS01 rna ? GO:0003723 ... P02359 24957822
    72 4u27:CH (2.8) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    73 4u27:CI (2.8) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    74 4u27:CJ (2.8) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    75 4u27:CK (2.8) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    76 4u27:CL (2.8) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    77 4u27:CM (2.8) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    78 4u27:CN (2.8) BS01 rna ? GO:0000028 ... P0AG59 24957822
    79 4u27:CO (2.8) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    80 4u27:CO (2.8) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    81 4u27:CP (2.8) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    82 4u27:CQ (2.8) BS01 rna ? GO:0000028 ... P0AG63 24957822
    83 4u27:CR (2.8) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    84 4u27:CS (2.8) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    85 4u27:CT (2.8) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    86 4u27:CU (2.8) BS01 rna ? GO:0003735 ... P68679 24957822
    87 4u27:D0 (2.8) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    88 4u27:D1 (2.8) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    89 4u27:D2 (2.8) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    90 4u27:D3 (2.8) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    91 4u27:D4 (2.8) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    92 4u27:D4 (2.8) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    93 4u27:DC (2.8) BS01 rna ? GO:0000027 ... P60422 24957822
    94 4u27:DD (2.8) BS01 rna ? GO:0000027 ... P60438 24957822
    95 4u27:DE (2.8) BS01 rna ? GO:0001070 ... P60723 24957822
    96 4u27:DF (2.8) BS01 rna ? GO:0000027 ... P62399 24957822
    97 4u27:DF (2.8) BS02 rna ? GO:0000027 ... P62399 24957822
    98 4u27:DG (2.8) BS01 rna ? GO:0000027 ... P0AG55 24957822
    99 4u27:DH (2.8) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    100 4u27:DI (2.8) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    101 4u27:DJ (2.8) BS01 rna ? GO:0002181 ... P0AA10 24957822
    102 4u27:DK (2.8) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    103 4u27:DL (2.8) BS01 rna ? GO:0002181 ... P02413 24957822
    104 4u27:DM (2.8) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    105 4u27:DM (2.8) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    106 4u27:DN (2.8) BS01 rna ? GO:0000027 ... P0AG44 24957822
    107 4u27:DO (2.8) BS01 rna ? GO:0002181 ... P0C018 24957822
    108 4u27:DO (2.8) BS02 rna ? GO:0002181 ... P0C018 24957822
    109 4u27:DP (2.8) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    110 4u27:DP (2.8) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    111 4u27:DQ (2.8) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    112 4u27:DR (2.8) BS01 rna ? GO:0002181 ... P0AG48 24957822
    113 4u27:DS (2.8) BS01 rna ? GO:0002181 ... P61175 24957822
    114 4u27:DT (2.8) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    115 4u27:DU (2.8) BS01 rna ? GO:0000027 ... P60624 24957822
    116 4u27:DV (2.8) BS01 rna ? GO:0000027 ... P68919 24957822
    117 4u27:DV (2.8) BS02 rna ? GO:0000027 ... P68919 24957822
    118 4u27:DW (2.8) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    119 4u27:DW (2.8) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    120 4u27:DX (2.8) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    121 4u27:DY (2.8) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    122 4u27:DZ (2.8) BS01 rna ? GO:0000027 ... P0AG51 24957822
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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