Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 119 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4u20:AB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    2 4u20:AC (2.9) BS01 rna ? GO:0003676 ... P0A7V3 24957822
    3 4u20:AD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    4 4u20:AE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    5 4u20:AF (2.9) BS01 rna ? GO:0003735 ... P02358 24957822
    6 4u20:AG (2.9) BS01 rna ? GO:0003723 ... P02359 24957822
    7 4u20:AH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    8 4u20:AI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    9 4u20:AJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    10 4u20:AK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    11 4u20:AK (2.9) BS02 rna ? GO:0002181 ... P0A7R9 24957822
    12 4u20:AL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    13 4u20:AM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    14 4u20:AN (2.9) BS01 rna ? GO:0000028 ... P0AG59 24957822
    15 4u20:AO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    16 4u20:AP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    17 4u20:AQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 24957822
    18 4u20:AR (2.9) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    19 4u20:AS (2.9) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    20 4u20:AT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    21 4u20:AU (2.9) BS01 rna ? GO:0003735 ... P68679 24957822
    22 4u20:B0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    23 4u20:B1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    24 4u20:B2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    25 4u20:B3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    26 4u20:B4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    27 4u20:B4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    28 4u20:B5 (2.9) BS01 rna ? GO:0000049 ... Q5SLP7 24957822
    29 4u20:BC (2.9) BS01 rna ? GO:0000027 ... P60422 24957822
    30 4u20:BD (2.9) BS01 rna ? GO:0000027 ... P60438 24957822
    31 4u20:BE (2.9) BS01 rna ? GO:0001070 ... P60723 24957822
    32 4u20:BF (2.9) BS01 rna ? GO:0000027 ... P62399 24957822
    33 4u20:BF (2.9) BS02 rna ? GO:0000027 ... P62399 24957822
    34 4u20:BG (2.9) BS01 rna ? GO:0000027 ... P0AG55 24957822
    35 4u20:BH (2.9) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    36 4u20:BH (2.9) BS02 rna ? GO:0002181 ... P0A7R1 24957822
    37 4u20:BI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    38 4u20:BJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 24957822
    39 4u20:BK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    40 4u20:BK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 24957822
    41 4u20:BL (2.9) BS01 rna ? GO:0002181 ... P02413 24957822
    42 4u20:BM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    43 4u20:BM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    44 4u20:BN (2.9) BS01 rna ? GO:0000027 ... P0AG44 24957822
    45 4u20:BO (2.9) BS01 rna ? GO:0002181 ... P0C018 24957822
    46 4u20:BO (2.9) BS02 rna ? GO:0002181 ... P0C018 24957822
    47 4u20:BP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    48 4u20:BP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    49 4u20:BQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    50 4u20:BR (2.9) BS01 rna ? GO:0002181 ... P0AG48 24957822
    51 4u20:BS (2.9) BS01 rna ? GO:0002181 ... P61175 24957822
    52 4u20:BT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    53 4u20:BU (2.9) BS01 rna ? GO:0000027 ... P60624 24957822
    54 4u20:BV (2.9) BS01 rna ? GO:0000027 ... P68919 24957822
    55 4u20:BV (2.9) BS02 rna ? GO:0000027 ... P68919 24957822
    56 4u20:BW (2.9) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    57 4u20:BW (2.9) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    58 4u20:BX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    59 4u20:BY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    60 4u20:BZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 24957822
    61 4u20:CB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    62 4u20:CB (2.9) BS02 rna ? GO:0000028 ... P0A7V0 24957822
    63 4u20:CC (2.9) BS01 rna ? GO:0003676 ... P0A7V3 24957822
    64 4u20:CD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    65 4u20:CD (2.9) BS02 rna ? GO:0000028 ... P0A7V8 24957822
    66 4u20:CE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    67 4u20:CF (2.9) BS01 rna ? GO:0003735 ... P02358 24957822
    68 4u20:CG (2.9) BS01 rna ? GO:0003723 ... P02359 24957822
    69 4u20:CH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    70 4u20:CI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    71 4u20:CJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    72 4u20:CK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    73 4u20:CL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    74 4u20:CM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    75 4u20:CN (2.9) BS01 rna ? GO:0000028 ... P0AG59 24957822
    76 4u20:CO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    77 4u20:CO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    78 4u20:CP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    79 4u20:CQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 24957822
    80 4u20:CR (2.9) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    81 4u20:CS (2.9) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    82 4u20:CT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    83 4u20:CU (2.9) BS01 rna ? GO:0003735 ... P68679 24957822
    84 4u20:D0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    85 4u20:D1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    86 4u20:D2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    87 4u20:D3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    88 4u20:D4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    89 4u20:DC (2.9) BS01 rna ? GO:0000027 ... P60422 24957822
    90 4u20:DD (2.9) BS01 rna ? GO:0000027 ... P60438 24957822
    91 4u20:DE (2.9) BS01 rna ? GO:0001070 ... P60723 24957822
    92 4u20:DF (2.9) BS01 rna ? GO:0000027 ... P62399 24957822
    93 4u20:DF (2.9) BS02 rna ? GO:0000027 ... P62399 24957822
    94 4u20:DG (2.9) BS01 rna ? GO:0000027 ... P0AG55 24957822
    95 4u20:DH (2.9) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    96 4u20:DI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    97 4u20:DJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 24957822
    98 4u20:DK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    99 4u20:DL (2.9) BS01 rna ? GO:0002181 ... P02413 24957822
    100 4u20:DM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    101 4u20:DM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    102 4u20:DN (2.9) BS01 rna ? GO:0000027 ... P0AG44 24957822
    103 4u20:DO (2.9) BS01 rna ? GO:0002181 ... P0C018 24957822
    104 4u20:DO (2.9) BS02 rna ? GO:0002181 ... P0C018 24957822
    105 4u20:DP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    106 4u20:DP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    107 4u20:DQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    108 4u20:DR (2.9) BS01 rna ? GO:0002181 ... P0AG48 24957822
    109 4u20:DS (2.9) BS01 rna ? GO:0002181 ... P61175 24957822
    110 4u20:DT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    111 4u20:DU (2.9) BS01 rna ? GO:0000027 ... P60624 24957822
    112 4u20:DV (2.9) BS01 rna ? GO:0000027 ... P68919 24957822
    113 4u20:DV (2.9) BS02 rna ? GO:0000027 ... P68919 24957822
    114 4u20:DW (2.9) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    115 4u20:DW (2.9) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    116 4u20:DX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    117 4u20:DY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    118 4u20:DZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 24957822
    119 4u20:DZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 24957822
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417