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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4rdq:A (2.85) BS01 CL N/A GO:0005254 ... N/A 25337878
    2 4rdq:A (2.85) BS02 CL N/A GO:0005254 ... N/A 25337878
    3 4rdq:A (2.85) BS03 CA N/A GO:0005254 ... N/A 25337878
    4 4rdq:A (2.85) BS04 C6N N/A GO:0005254 ... N/A 25337878
    5 4rdq:A (2.85) BS05 CL N/A GO:0005254 ... N/A 25337878
    6 4rdq:B (2.85) BS01 CL N/A GO:0005254 ... N/A 25337878
    7 4rdq:B (2.85) BS02 CA N/A GO:0005254 ... N/A 25337878
    8 4rdq:B (2.85) BS03 CL N/A GO:0005254 ... N/A 25337878
    9 4rdq:B (2.85) BS04 CL N/A GO:0005254 ... N/A 25337878
    10 4rdq:B (2.85) BS05 C6N N/A GO:0005254 ... N/A 25337878
    11 4rdq:C (2.85) BS01 CL N/A GO:0005254 ... N/A 25337878
    12 4rdq:C (2.85) BS02 CA N/A GO:0005254 ... N/A 25337878
    13 4rdq:C (2.85) BS03 CL N/A GO:0005254 ... N/A 25337878
    14 4rdq:C (2.85) BS04 CL N/A GO:0005254 ... N/A 25337878
    15 4rdq:C (2.85) BS05 C6N N/A GO:0005254 ... N/A 25337878
    16 4rdq:D (2.85) BS01 CL N/A GO:0005254 ... N/A 25337878
    17 4rdq:D (2.85) BS02 CA N/A GO:0005254 ... N/A 25337878
    18 4rdq:D (2.85) BS03 CL N/A GO:0005254 ... N/A 25337878
    19 4rdq:D (2.85) BS04 CL N/A GO:0005254 ... N/A 25337878
    20 4rdq:D (2.85) BS05 C6N N/A GO:0005254 ... N/A 25337878
    21 4rdq:E (2.85) BS01 CL N/A GO:0005254 ... N/A 25337878
    22 4rdq:E (2.85) BS02 CA N/A GO:0005254 ... N/A 25337878
    23 4rdq:E (2.85) BS03 CL N/A GO:0005254 ... N/A 25337878
    24 4rdq:E (2.85) BS04 CL N/A GO:0005254 ... N/A 25337878
    25 4rdq:E (2.85) BS05 C6N N/A GO:0005254 ... N/A 25337878
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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