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BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4pjo:A (3.3) BS01 rna ? GO:0000243 ... P62318 25555158
    2 4pjo:B (3.3) BS01 rna ? GO:0003723 ... P14678 25555158
    3 4pjo:C (3.3) BS01 rna ? GO:0000387 ... P62314 25555158
    4 4pjo:D (3.3) BS01 rna ? GO:0000245 ... P62316 25555158
    5 4pjo:E (3.3) BS01 rna ? GO:0000245 ... P62304 25555158
    6 4pjo:F (3.3) BS01 rna ? GO:0000387 ... P62306 25555158
    7 4pjo:G (3.3) BS01 rna ? GO:0000245 ... P62308 25555158
    8 4pjo:K (3.3) BS01 rna ? N/A P08621 25555158
    9 4pjo:L (3.3) BS01 rna ? GO:0000387 ... P09234 25555158
    10 4pjo:L (3.3) BS02 rna ? GO:0000387 ... P09234 25555158
    11 4pjo:L (3.3) BS03 ZN ? GO:0000387 ... P09234 25555158
    12 4pjo:M (3.3) BS01 rna ? GO:0000387 ... P09234 25555158
    13 4pjo:M (3.3) BS02 rna ? GO:0000387 ... P09234 25555158
    14 4pjo:M (3.3) BS03 ZN ? GO:0000387 ... P09234 25555158
    15 4pjo:N (3.3) BS01 rna ? N/A P08621 25555158
    16 4pjo:O (3.3) BS01 rna ? GO:0000243 ... P62318 25555158
    17 4pjo:P (3.3) BS01 rna ? GO:0003723 ... P14678 25555158
    18 4pjo:Q (3.3) BS01 rna ? GO:0000387 ... P62314 25555158
    19 4pjo:R (3.3) BS01 rna ? GO:0000245 ... P62316 25555158
    20 4pjo:S (3.3) BS01 rna ? GO:0000245 ... P62304 25555158
    21 4pjo:T (3.3) BS01 rna ? GO:0000387 ... P62306 25555158
    22 4pjo:U (3.3) BS01 rna ? GO:0000245 ... P62308 25555158
    23 4pjo:a (3.3) BS01 rna ? GO:0000243 ... P62318 25555158
    24 4pjo:b (3.3) BS01 rna ? GO:0003723 ... P14678 25555158
    25 4pjo:c (3.3) BS01 rna ? GO:0000387 ... P62314 25555158
    26 4pjo:d (3.3) BS01 rna ? GO:0000245 ... P62316 25555158
    27 4pjo:e (3.3) BS01 rna ? GO:0000245 ... P62304 25555158
    28 4pjo:f (3.3) BS01 rna ? GO:0000387 ... P62306 25555158
    29 4pjo:g (3.3) BS01 rna ? GO:0000245 ... P62308 25555158
    30 4pjo:k (3.3) BS01 rna ? N/A P08621 25555158
    31 4pjo:l (3.3) BS01 rna ? GO:0000387 ... P09234 25555158
    32 4pjo:l (3.3) BS02 rna ? GO:0000387 ... P09234 25555158
    33 4pjo:l (3.3) BS03 ZN ? GO:0000387 ... P09234 25555158
    34 4pjo:l (3.3) BS04 MG ? GO:0000387 ... P09234 25555158
    35 4pjo:m (3.3) BS01 rna ? GO:0000387 ... P09234 25555158
    36 4pjo:m (3.3) BS02 rna ? GO:0000387 ... P09234 25555158
    37 4pjo:m (3.3) BS03 ZN ? GO:0000387 ... P09234 25555158
    38 4pjo:m (3.3) BS04 MG ? GO:0000387 ... P09234 25555158
    39 4pjo:n (3.3) BS01 rna ? N/A P08621 25555158
    40 4pjo:o (3.3) BS01 rna ? GO:0000243 ... P62318 25555158
    41 4pjo:p (3.3) BS01 rna ? GO:0003723 ... P14678 25555158
    42 4pjo:q (3.3) BS01 rna ? GO:0000387 ... P62314 25555158
    43 4pjo:r (3.3) BS01 rna ? GO:0000245 ... P62316 25555158
    44 4pjo:s (3.3) BS01 rna ? GO:0000245 ... P62304 25555158
    45 4pjo:t (3.3) BS01 rna ? GO:0000387 ... P62306 25555158
    46 4pjo:u (3.3) BS01 rna ? GO:0000245 ... P62308 25555158
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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