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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4lnf:A (2.949) BS01 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    2 4lnf:A (2.949) BS02 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    3 4lnf:A (2.949) BS03 GLN 6.3.1.2 GO:0000287 ... P12425 24158439 PDBbind: -logKd/Ki=2.62, IC50=2.4mM
    4 4lnf:B (2.949) BS01 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    5 4lnf:B (2.949) BS02 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    6 4lnf:B (2.949) BS03 GLN 6.3.1.2 GO:0000287 ... P12425 24158439 PDBbind: -logKd/Ki=2.62, IC50=2.4mM
    7 4lnf:C (2.949) BS01 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    8 4lnf:C (2.949) BS02 GLN 6.3.1.2 GO:0000287 ... P12425 24158439
    9 4lnf:D (2.949) BS01 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    10 4lnf:D (2.949) BS02 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    11 4lnf:D (2.949) BS03 GLN 6.3.1.2 GO:0000287 ... P12425 24158439
    12 4lnf:E (2.949) BS01 GLN 6.3.1.2 GO:0000287 ... P12425 24158439
    13 4lnf:E (2.949) BS02 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    14 4lnf:E (2.949) BS03 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    15 4lnf:E (2.949) BS04 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    16 4lnf:F (2.949) BS01 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    17 4lnf:F (2.949) BS02 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    18 4lnf:F (2.949) BS03 GLN 6.3.1.2 GO:0000287 ... P12425 24158439
    19 4lnf:G (2.949) BS01 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    20 4lnf:G (2.949) BS02 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    21 4lnf:G (2.949) BS03 GLN 6.3.1.2 GO:0000287 ... P12425 24158439
    22 4lnf:H (2.949) BS01 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    23 4lnf:H (2.949) BS02 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    24 4lnf:H (2.949) BS03 GLN 6.3.1.2 GO:0000287 ... P12425 24158439
    25 4lnf:I (2.949) BS01 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    26 4lnf:I (2.949) BS02 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    27 4lnf:I (2.949) BS03 GLN 6.3.1.2 GO:0000287 ... P12425 24158439
    28 4lnf:J (2.949) BS01 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    29 4lnf:J (2.949) BS02 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    30 4lnf:J (2.949) BS03 GLN 6.3.1.2 GO:0000287 ... P12425 24158439
    31 4lnf:K (2.949) BS01 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    32 4lnf:K (2.949) BS02 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    33 4lnf:K (2.949) BS03 GLN 6.3.1.2 GO:0000287 ... P12425 24158439
    34 4lnf:L (2.949) BS01 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    35 4lnf:L (2.949) BS02 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    36 4lnf:L (2.949) BS03 GLN 6.3.1.2 GO:0000287 ... P12425 24158439
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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