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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3zbi:B (8.5) BS01 peptide ? N/A Q46704 23511972
    2 3zbi:D (8.5) BS01 peptide ? N/A Q46705 23511972
    3 3zbi:E (8.5) BS01 peptide ? N/A Q46704 23511972
    4 3zbi:G (8.5) BS01 peptide ? N/A Q46705 23511972
    5 3zbi:H (8.5) BS01 peptide ? N/A Q46704 23511972
    6 3zbi:J (8.5) BS01 peptide ? N/A Q46705 23511972
    7 3zbi:K (8.5) BS01 peptide ? N/A Q46704 23511972
    8 3zbi:M (8.5) BS01 peptide ? N/A Q46705 23511972
    9 3zbi:N (8.5) BS01 peptide ? N/A Q46704 23511972
    10 3zbi:P (8.5) BS01 peptide ? N/A Q46705 23511972
    11 3zbi:Q (8.5) BS01 peptide ? N/A Q46704 23511972
    12 3zbi:S (8.5) BS01 peptide ? N/A Q46705 23511972
    13 3zbi:T (8.5) BS01 peptide ? N/A Q46704 23511972
    14 3zbi:V (8.5) BS01 peptide ? N/A Q46705 23511972
    15 3zbi:W (8.5) BS01 peptide ? N/A Q46704 23511972
    16 3zbi:Y (8.5) BS01 peptide ? N/A Q46705 23511972
    17 3zbi:Z (8.5) BS01 peptide ? N/A Q46704 23511972
    18 3zbi:b (8.5) BS01 peptide ? N/A Q46705 23511972
    19 3zbi:c (8.5) BS01 peptide ? N/A Q46704 23511972
    20 3zbi:e (8.5) BS01 peptide ? N/A Q46705 23511972
    21 3zbi:f (8.5) BS01 peptide ? N/A Q46704 23511972
    22 3zbi:h (8.5) BS01 peptide ? N/A Q46705 23511972
    23 3zbi:i (8.5) BS01 peptide ? N/A Q46704 23511972
    24 3zbi:k (8.5) BS01 peptide ? N/A Q46705 23511972
    25 3zbi:l (8.5) BS01 peptide ? N/A Q46704 23511972
    26 3zbi:n (8.5) BS01 peptide ? N/A Q46705 23511972
    27 3zbi:o (8.5) BS01 peptide ? N/A Q46704 23511972

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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