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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3sdi:2 (2.65) BS01 MG 3.4.25.1 GO:0000502 ... P38624 20875739
    2 3sdi:F (2.65) BS01 MG 3.4.25.1 GO:0005839 ... P21242 20875739
    3 3sdi:G (2.65) BS01 MG 3.4.25.1 GO:0000502 ... P21243 20875739
    4 3sdi:H (2.65) BS01 MG 3.4.25.1 GO:0004298 ... P25043 20875739
    5 3sdi:I (2.65) BS01 MG 3.4.25.1 GO:0000502 ... P25451 20875739
    6 3sdi:K (2.65) BS01 MG 3.4.25.1 GO:0004298 ... P30656 20875739
    7 3sdi:K (2.65) BS02 3SD 3.4.25.1 GO:0004298 ... P30656 20875739 PDBbind: -logKd/Ki=8.33, IC50=4.7nM
    8 3sdi:L (2.65) BS01 3SD 3.4.25.1 GO:0000502 ... P23724 20875739 PDBbind: -logKd/Ki=8.33, IC50=4.7nM
    9 3sdi:L (2.65) BS02 MG 3.4.25.1 GO:0000502 ... P23724 20875739
    10 3sdi:L (2.65) BS03 MG 3.4.25.1 GO:0000502 ... P23724 20875739
    11 3sdi:N (2.65) BS01 MG 3.4.25.1 GO:0000502 ... P38624 20875739
    12 3sdi:T (2.65) BS01 MG 3.4.25.1 GO:0005839 ... P21242 20875739
    13 3sdi:U (2.65) BS01 MG 3.4.25.1 GO:0000502 ... P21243 20875739
    14 3sdi:U (2.65) BS02 MG 3.4.25.1 GO:0000502 ... P21243 20875739
    15 3sdi:V (2.65) BS01 MG 3.4.25.1 GO:0004298 ... P25043 20875739
    16 3sdi:W (2.65) BS01 MG 3.4.25.1 GO:0000502 ... P25451 20875739
    17 3sdi:Y (2.65) BS01 MG 3.4.25.1 GO:0004298 ... P30656 20875739
    18 3sdi:Y (2.65) BS02 3SD 3.4.25.1 GO:0004298 ... P30656 20875739
    19 3sdi:Z (2.65) BS01 3SD 3.4.25.1 GO:0000502 ... P23724 20875739
    20 3sdi:Z (2.65) BS02 MG 3.4.25.1 GO:0000502 ... P23724 20875739
    21 3sdi:Z (2.65) BS03 MG 3.4.25.1 GO:0000502 ... P23724 20875739
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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