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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3n7a:A (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    PDBbind: -logKd/Ki=3.70, Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    2 3n7a:B (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    3 3n7a:C (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    4 3n7a:D (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    5 3n7a:E (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    6 3n7a:F (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    7 3n7a:G (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    8 3n7a:H (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    9 3n7a:I (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    10 3n7a:J (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    11 3n7a:K (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    12 3n7a:L (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    PDBbind: -logKd/Ki=3.70, Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    13 3n7a:M (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    14 3n7a:N (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    15 3n7a:O (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    16 3n7a:P (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    17 3n7a:Q (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    18 3n7a:R (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    19 3n7a:S (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    20 3n7a:T (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    21 3n7a:U (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    22 3n7a:V (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    23 3n7a:W (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    24 3n7a:X (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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