Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 103 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jcs:A (2.8) BS01 rna N/A GO:0003735 ... N/A 27373148
    2 3jcs:A (2.8) BS02 rna N/A GO:0003735 ... N/A 27373148
    3 3jcs:A (2.8) BS03 rna N/A GO:0003735 ... N/A 27373148
    4 3jcs:B (2.8) BS01 rna N/A GO:0003735 ... N/A 27373148
    5 3jcs:B (2.8) BS02 rna N/A GO:0003735 ... N/A 27373148
    6 3jcs:B (2.8) BS03 rna N/A GO:0003735 ... N/A 27373148
    7 3jcs:B (2.8) BS04 rna N/A GO:0003735 ... N/A 27373148
    8 3jcs:C (2.8) BS01 rna ? GO:0003723 ... A0A3S5H7L0 27373148
    9 3jcs:C (2.8) BS02 rna ? GO:0003723 ... A0A3S5H7L0 27373148
    10 3jcs:C (2.8) BS03 rna ? GO:0003723 ... A0A3S5H7L0 27373148
    11 3jcs:D (2.8) BS01 rna ? GO:0003723 ... A0A3S5H5A8 27373148
    12 3jcs:D (2.8) BS02 rna ? GO:0003723 ... A0A3S5H5A8 27373148
    13 3jcs:E (2.8) BS01 rna ? GO:0002181 ... A0A3S7WWL2 27373148
    14 3jcs:E (2.8) BS02 rna ? GO:0002181 ... A0A3S7WWL2 27373148
    15 3jcs:E (2.8) BS03 rna ? GO:0002181 ... A0A3S7WWL2 27373148
    16 3jcs:F (2.8) BS01 rna N/A GO:0003735 ... N/A 27373148
    17 3jcs:F (2.8) BS02 rna N/A GO:0003735 ... N/A 27373148
    18 3jcs:G (2.8) BS01 rna ? GO:0000470 ... E9B949 27373148
    19 3jcs:G (2.8) BS02 rna ? GO:0000470 ... E9B949 27373148
    20 3jcs:G (2.8) BS03 rna ? GO:0000470 ... E9B949 27373148
    21 3jcs:H (2.8) BS01 rna N/A GO:0003735 ... N/A 27373148
    22 3jcs:H (2.8) BS02 rna N/A GO:0003735 ... N/A 27373148
    23 3jcs:H (2.8) BS03 rna N/A GO:0003735 ... N/A 27373148
    24 3jcs:H (2.8) BS04 rna N/A GO:0003735 ... N/A 27373148
    25 3jcs:I (2.8) BS01 rna N/A GO:0003735 ... N/A 27373148
    26 3jcs:I (2.8) BS02 rna N/A GO:0003735 ... N/A 27373148
    27 3jcs:J (2.8) BS01 rna ? GO:0003735 ... A0A3Q8IIA7 27373148
    28 3jcs:J (2.8) BS02 rna ? GO:0003735 ... A0A3Q8IIA7 27373148
    29 3jcs:K (2.8) BS01 rna ? GO:0003723 ... E9BG02 27373148
    30 3jcs:K (2.8) BS02 rna ? GO:0003723 ... E9BG02 27373148
    31 3jcs:L (2.8) BS01 rna ? GO:0003735 ... A0A3Q8IGI9 27373148
    32 3jcs:L (2.8) BS02 rna ? GO:0003735 ... A0A3Q8IGI9 27373148
    33 3jcs:M (2.8) BS01 rna ? GO:0002181 ... E9BMB4 27373148
    34 3jcs:M (2.8) BS02 rna ? GO:0002181 ... E9BMB4 27373148
    35 3jcs:M (2.8) BS03 rna ? GO:0002181 ... E9BMB4 27373148
    36 3jcs:M (2.8) BS04 MG ? GO:0002181 ... E9BMB4 27373148
    37 3jcs:N (2.8) BS01 rna ? GO:0000027 ... A0A3S5H5C4 27373148
    38 3jcs:N (2.8) BS02 rna ? GO:0000027 ... A0A3S5H5C4 27373148
    39 3jcs:N (2.8) BS03 rna ? GO:0000027 ... A0A3S5H5C4 27373148
    40 3jcs:O (2.8) BS01 rna ? GO:0000027 ... A0A3Q8IJC5 27373148
    41 3jcs:O (2.8) BS02 rna ? GO:0000027 ... A0A3Q8IJC5 27373148
    42 3jcs:O (2.8) BS03 rna ? GO:0000027 ... A0A3Q8IJC5 27373148
    43 3jcs:P (2.8) BS01 rna ? GO:0003723 ... A0A3S7XBN1 27373148
    44 3jcs:P (2.8) BS02 rna ? GO:0003723 ... A0A3S7XBN1 27373148
    45 3jcs:Q (2.8) BS01 rna ? GO:0003723 ... E9B8Q2 27373148
    46 3jcs:Q (2.8) BS02 rna ? GO:0003723 ... E9B8Q2 27373148
    47 3jcs:Q (2.8) BS03 rna ? GO:0003723 ... E9B8Q2 27373148
    48 3jcs:Q (2.8) BS04 rna ? GO:0003723 ... E9B8Q2 27373148
    49 3jcs:R (2.8) BS01 rna ? GO:0003735 ... A0A3Q8II03 27373148
    50 3jcs:R (2.8) BS02 rna ? GO:0003735 ... A0A3Q8II03 27373148
    51 3jcs:S (2.8) BS01 rna ? GO:0003735 ... A0A3Q8ICH0 27373148
    52 3jcs:S (2.8) BS02 rna ? GO:0003735 ... A0A3Q8ICH0 27373148
    53 3jcs:S (2.8) BS03 rna ? GO:0003735 ... A0A3Q8ICH0 27373148
    54 3jcs:T (2.8) BS01 rna ? GO:0002181 ... A0A3S7WY02 27373148
    55 3jcs:T (2.8) BS02 rna ? GO:0002181 ... A0A3S7WY02 27373148
    56 3jcs:T (2.8) BS03 rna ? GO:0002181 ... A0A3S7WY02 27373148
    57 3jcs:T (2.8) BS04 rna ? GO:0002181 ... A0A3S7WY02 27373148
    58 3jcs:U (2.8) BS01 rna ? GO:0002181 ... A0A3Q8IJA8 27373148
    59 3jcs:V (2.8) BS01 rna ? GO:0000027 ... E9B8R9 27373148
    60 3jcs:V (2.8) BS02 rna ? GO:0000027 ... E9B8R9 27373148
    61 3jcs:V (2.8) BS03 rna ? GO:0000027 ... E9B8R9 27373148
    62 3jcs:W (2.8) BS01 rna N/A GO:0003723 ... N/A 27373148
    63 3jcs:W (2.8) BS02 rna N/A GO:0003723 ... N/A 27373148
    64 3jcs:X (2.8) BS01 rna N/A N/A N/A 27373148
    65 3jcs:X (2.8) BS02 rna N/A N/A N/A 27373148
    66 3jcs:Y (2.8) BS01 rna ? GO:0003735 ... E9BP34 27373148
    67 3jcs:Y (2.8) BS02 rna ? GO:0003735 ... E9BP34 27373148
    68 3jcs:Z (2.8) BS01 rna ? GO:0003735 ... A0A3Q8I959 27373148
    69 3jcs:a (2.8) BS01 rna ? GO:0000463 ... E9BIP6 27373148
    70 3jcs:a (2.8) BS02 rna ? GO:0000463 ... E9BIP6 27373148
    71 3jcs:b (2.8) BS01 rna ? GO:0002181 ... E9BU64 27373148
    72 3jcs:b (2.8) BS02 rna ? GO:0002181 ... E9BU64 27373148
    73 3jcs:c (2.8) BS01 rna ? GO:0000463 ... E9BI29 27373148
    74 3jcs:c (2.8) BS02 rna ? GO:0000463 ... E9BI29 27373148
    75 3jcs:d (2.8) BS01 rna ? GO:0003723 ... A0A3Q8IET6 27373148
    76 3jcs:d (2.8) BS02 rna ? GO:0003723 ... A0A3Q8IET6 27373148
    77 3jcs:e (2.8) BS01 rna ? GO:0002181 ... E9BSK4 27373148
    78 3jcs:e (2.8) BS02 rna ? GO:0002181 ... E9BSK4 27373148
    79 3jcs:e (2.8) BS03 rna ? GO:0002181 ... E9BSK4 27373148
    80 3jcs:e (2.8) BS04 rna ? GO:0002181 ... E9BSK4 27373148
    81 3jcs:f (2.8) BS01 rna ? GO:0003735 ... A0A3Q8IBA2 27373148
    82 3jcs:g (2.8) BS01 rna ? GO:0002181 ... A0A3Q8II82 27373148
    83 3jcs:g (2.8) BS02 rna ? GO:0002181 ... A0A3Q8II82 27373148
    84 3jcs:g (2.8) BS03 rna ? GO:0002181 ... A0A3Q8II82 27373148
    85 3jcs:h (2.8) BS01 rna ? GO:0003735 ... A0A3Q8IHK2 27373148
    86 3jcs:h (2.8) BS02 rna ? GO:0003735 ... A0A3Q8IHK2 27373148
    87 3jcs:h (2.8) BS03 rna ? GO:0003735 ... A0A3Q8IHK2 27373148
    88 3jcs:i (2.8) BS01 rna ? GO:0002181 ... A0A3Q8IDW6 27373148
    89 3jcs:i (2.8) BS02 rna ? GO:0002181 ... A0A3Q8IDW6 27373148
    90 3jcs:j (2.8) BS01 rna ? GO:0003723 ... P62885 27373148
    91 3jcs:j (2.8) BS02 rna ? GO:0003723 ... P62885 27373148
    92 3jcs:j (2.8) BS03 rna ? GO:0003723 ... P62885 27373148
    93 3jcs:k (2.8) BS01 rna ? GO:0003735 ... E9B7P2 27373148
    94 3jcs:k (2.8) BS02 rna ? GO:0003735 ... E9B7P2 27373148
    95 3jcs:k (2.8) BS03 rna ? GO:0003735 ... E9B7P2 27373148
    96 3jcs:l (2.8) BS01 rna ? GO:0003735 ... E9BCX6 27373148
    97 3jcs:l (2.8) BS02 rna ? GO:0003735 ... E9BCX6 27373148
    98 3jcs:l (2.8) BS03 rna ? GO:0003735 ... E9BCX6 27373148
    99 3jcs:m (2.8) BS01 rna ? GO:0003735 ... E9BFK4 27373148
    100 3jcs:m (2.8) BS02 rna ? GO:0003735 ... E9BFK4 27373148
    101 3jcs:m (2.8) BS03 rna ? GO:0003735 ... E9BFK4 27373148
    102 3jcs:n (2.8) BS01 rna ? GO:0003735 ... E9BBL5 27373148
    103 3jcs:n (2.8) BS02 rna ? GO:0003735 ... E9BBL5 27373148
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218