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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jcj:1 (3.7) BS01 rna ? GO:0002181 ... P0A7T7 26973877
    2 3jcj:2 (3.7) BS01 rna ? GO:0000028 ... P68679 26973877
    3 3jcj:3 (3.7) BS01 rna ? GO:0000028 ... P0A7U7 26973877
    4 3jcj:B (3.7) BS01 rna ? GO:0000027 ... P60422 26973877
    5 3jcj:B (3.7) BS02 rna ? GO:0000027 ... P60422 26973877
    6 3jcj:C (3.7) BS01 rna ? GO:0000027 ... P60438 26973877
    7 3jcj:D (3.7) BS01 rna ? GO:0001070 ... P60723 26973877
    8 3jcj:E (3.7) BS01 rna ? GO:0000027 ... P62399 26973877
    9 3jcj:E (3.7) BS02 rna ? GO:0000027 ... P62399 26973877
    10 3jcj:F (3.7) BS01 rna ? GO:0000027 ... P0AG55 26973877
    11 3jcj:G (3.7) BS01 rna ? GO:0002181 ... P0A7R1 26973877
    12 3jcj:H (3.7) BS01 rna ? GO:0000027 ... P0A7J7 26973877
    13 3jcj:I (3.7) BS01 rna ? GO:0002181 ... P0AA10 26973877
    14 3jcj:J (3.7) BS01 rna ? GO:0002181 ... P0ADY3 26973877
    15 3jcj:J (3.7) BS02 rna ? GO:0002181 ... P0ADY3 26973877
    16 3jcj:K (3.7) BS01 rna ? GO:0002181 ... P02413 26973877
    17 3jcj:L (3.7) BS01 rna ? GO:0000027 ... P0ADY7 26973877
    18 3jcj:L (3.7) BS02 rna ? GO:0000027 ... P0ADY7 26973877
    19 3jcj:M (3.7) BS01 rna ? GO:0000027 ... P0AG44 26973877
    20 3jcj:N (3.7) BS01 rna ? GO:0002181 ... P0C018 26973877
    21 3jcj:N (3.7) BS02 rna ? GO:0002181 ... P0C018 26973877
    22 3jcj:O (3.7) BS01 rna ? GO:0000027 ... P0A7K6 26973877
    23 3jcj:O (3.7) BS02 rna ? GO:0000027 ... P0A7K6 26973877
    24 3jcj:P (3.7) BS01 rna ? GO:0000027 ... P0A7L3 26973877
    25 3jcj:Q (3.7) BS01 rna ? GO:0002181 ... P0AG48 26973877
    26 3jcj:R (3.7) BS01 rna ? GO:0002181 ... P61175 26973877
    27 3jcj:S (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 26973877
    28 3jcj:T (3.7) BS01 rna ? GO:0000027 ... P60624 26973877
    29 3jcj:U (3.7) BS01 rna ? GO:0000027 ... P68919 26973877
    30 3jcj:U (3.7) BS02 rna ? GO:0000027 ... P68919 26973877
    31 3jcj:V (3.7) BS01 rna ? GO:0000027 ... P0A7L8 26973877
    32 3jcj:W (3.7) BS01 rna ? GO:0000027 ... P0A7M2 26973877
    33 3jcj:X (3.7) BS01 rna ? GO:0000027 ... P0A7M6 26973877
    34 3jcj:Y (3.7) BS01 rna ? GO:0000027 ... P0AG51 26973877
    35 3jcj:Y (3.7) BS02 rna ? GO:0000027 ... P0AG51 26973877
    36 3jcj:Z (3.7) BS01 rna ? GO:0000027 ... P0A7N4 26973877
    37 3jcj:a (3.7) BS01 rna ? GO:0000027 ... P0A7N9 26973877
    38 3jcj:a (3.7) BS02 rna ? GO:0000027 ... P0A7N9 26973877
    39 3jcj:b (3.7) BS01 rna ? GO:0002181 ... P0A7P5 26973877
    40 3jcj:c (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 26973877
    41 3jcj:d (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 26973877
    42 3jcj:d (3.7) BS02 ZN ? GO:0002181 ... P0A7Q6 26973877
    43 3jcj:e (3.7) BS01 rna ? GO:0002181 ... P0A7J3 26973877
    44 3jcj:f (3.7) BS01 rna ? GO:0003743 ... P0A705 26973877
    45 3jcj:f (3.7) BS02 rna ? GO:0003743 ... P0A705 26973877
    46 3jcj:f (3.7) BS03 rna ? GO:0003743 ... P0A705 26973877
    47 3jcj:f (3.7) BS04 GNP ? GO:0003743 ... P0A705 26973877
    48 3jcj:f (3.7) BS05 FME ? GO:0003743 ... P0A705 26973877
    49 3jcj:h (3.7) BS01 rna ? GO:0000028 ... P0A7V3 26973877
    50 3jcj:j (3.7) BS01 rna ? GO:0000028 ... P0A7V0 26973877
    51 3jcj:k (3.7) BS01 rna ? GO:0000028 ... P0A7W1 26973877
    52 3jcj:l (3.7) BS01 rna ? GO:0000028 ... P0A7V8 26973877
    53 3jcj:m (3.7) BS01 rna ? GO:0000028 ... P02359 26973877
    54 3jcj:n (3.7) BS01 rna ? GO:0002181 ... P02358 26973877
    55 3jcj:o (3.7) BS01 rna ? GO:0000049 ... P0A7X3 26973877
    56 3jcj:p (3.7) BS01 rna ? GO:0000028 ... P0A7W7 26973877
    57 3jcj:q (3.7) BS01 rna ? GO:0002181 ... P0A7R9 26973877
    58 3jcj:r (3.7) BS01 rna ? GO:0000049 ... P0A7R5 26973877
    59 3jcj:s (3.7) BS01 rna ? GO:0000049 ... P0A7S9 26973877
    60 3jcj:t (3.7) BS01 rna ? GO:0000049 ... P0A7S3 26973877
    61 3jcj:u (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 26973877
    62 3jcj:u (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 26973877
    63 3jcj:w (3.7) BS01 rna ? GO:0000028 ... P0AG59 26973877
    64 3jcj:x (3.7) BS01 rna ? GO:0000028 ... P0AG63 26973877
    65 3jcj:y (3.7) BS01 rna ? GO:0000028 ... P0A7T3 26973877
    66 3jcj:z (3.7) BS01 rna ? GO:0000028 ... P0A7U3 26973877
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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