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BioLiP
Download all results in tab-seperated text for 93 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jbn:1 (4.7) BS01 rna ? GO:0003735 ... Q8I3R6 26432834
    2 3jbn:2 (4.7) BS01 rna ? N/A Q8ILN8 26432834
    3 3jbn:3 (4.7) BS01 rna ? GO:0003735 ... O96258 26432834
    4 3jbn:4 (4.7) BS01 rna ? GO:0000028 ... Q8IEN2 26432834
    5 3jbn:5 (4.7) BS01 rna ? GO:0000028 ... Q8IKL9 26432834
    6 3jbn:6 (4.7) BS01 rna ? GO:0003735 ... O96269 26432834
    7 3jbn:A0 (4.7) BS01 rna ? N/A Q8IEM3 26432834
    8 3jbn:A1 (4.7) BS01 rna ? GO:0003735 ... Q8IKM5 26432834
    9 3jbn:A2 (4.7) BS01 rna ? GO:0005840 ... Q8IHU0 26432834
    10 3jbn:A3 (4.7) BS01 rna ? GO:0000463 ... Q8IIB4 26432834
    11 3jbn:A3 (4.7) BS02 rna ? GO:0000463 ... Q8IIB4 26432834
    12 3jbn:A4 (4.7) BS01 rna ? GO:0002181 ... C6S3J6 26432834
    13 3jbn:A5 (4.7) BS01 rna ? GO:0000463 ... O97250 26432834
    14 3jbn:A5 (4.7) BS02 rna ? GO:0000463 ... O97250 26432834
    15 3jbn:A6 (4.7) BS01 rna ? GO:0003723 ... Q8IJK8 26432834
    16 3jbn:A7 (4.7) BS01 rna ? GO:0003735 ... Q8I463 26432834
    17 3jbn:A8 (4.7) BS01 rna ? GO:0003735 ... Q8I3B0 26432834
    18 3jbn:A9 (4.7) BS01 rna ? GO:0003735 ... Q8IHT9 26432834
    19 3jbn:AD (4.7) BS01 rna ? GO:0002181 ... Q8I3T9 26432834
    20 3jbn:AD (4.7) BS02 rna ? GO:0002181 ... Q8I3T9 26432834
    21 3jbn:AE (4.7) BS01 rna ? GO:0003723 ... Q8IJC6 26432834
    22 3jbn:AF (4.7) BS01 rna ? GO:0003723 ... Q8I431 26432834
    23 3jbn:AF (4.7) BS02 rna ? GO:0003723 ... Q8I431 26432834
    24 3jbn:AG (4.7) BS01 rna ? GO:0003723 ... Q8IBQ6 26432834
    25 3jbn:AG (4.7) BS02 rna ? GO:0003723 ... Q8IBQ6 26432834
    26 3jbn:AH (4.7) BS01 rna ? GO:0002181 ... Q8IE85 26432834
    27 3jbn:AI (4.7) BS01 rna N/A GO:0003735 ... N/A 26432834
    28 3jbn:AJ (4.7) BS01 rna ? N/A Q8ILL2 26432834
    29 3jbn:AK (4.7) BS01 rna ? GO:0003729 ... Q8IJZ7 26432834
    30 3jbn:AL (4.7) BS01 rna ? GO:0003723 ... Q8IAX6 26432834
    31 3jbn:AL (4.7) BS02 rna ? GO:0003723 ... Q8IAX6 26432834
    32 3jbn:AM (4.7) BS01 rna ? GO:0003735 ... Q8IE09 26432834
    33 3jbn:AN (4.7) BS01 rna ? GO:0003723 ... Q8ILE8 26432834
    34 3jbn:AO (4.7) BS01 rna ? GO:0003735 ... C6KT23 26432834
    35 3jbn:AP (4.7) BS01 rna ? GO:0002181 ... C0H4A6 26432834
    36 3jbn:AP (4.7) BS02 rna ? GO:0002181 ... C0H4A6 26432834
    37 3jbn:AQ (4.7) BS01 rna ? GO:0000027 ... Q8ILV2 26432834
    38 3jbn:AQ (4.7) BS02 rna ? GO:0000027 ... Q8ILV2 26432834
    39 3jbn:AR (4.7) BS01 rna ? GO:0000027 ... Q8ILL3 26432834
    40 3jbn:AR (4.7) BS02 rna ? GO:0000027 ... Q8ILL3 26432834
    41 3jbn:AS (4.7) BS01 rna ? GO:0003723 ... C0H5G3 26432834
    42 3jbn:AT (4.7) BS01 rna ? GO:0003723 ... C6KSY6 26432834
    43 3jbn:AT (4.7) BS02 rna ? GO:0003723 ... C6KSY6 26432834
    44 3jbn:AU (4.7) BS01 rna ? GO:0003735 ... Q8IDS6 26432834
    45 3jbn:AU (4.7) BS02 rna ? GO:0003735 ... Q8IDS6 26432834
    46 3jbn:AV (4.7) BS01 rna ? GO:0003735 ... Q8ILK3 26432834
    47 3jbn:AV (4.7) BS02 rna ? GO:0003735 ... Q8ILK3 26432834
    48 3jbn:AW (4.7) BS01 rna ? GO:0003735 ... Q8IDI5 26432834
    49 3jbn:AW (4.7) BS02 rna ? GO:0003735 ... Q8IDI5 26432834
    50 3jbn:AX (4.7) BS01 rna ? GO:0003735 ... Q8IB51 26432834
    51 3jbn:AY (4.7) BS01 rna ? GO:0003735 ... Q8IE82 26432834
    52 3jbn:AY (4.7) BS02 rna ? GO:0003735 ... Q8IE82 26432834
    53 3jbn:AZ (4.7) BS01 rna ? GO:0002181 ... O77364 26432834
    54 3jbn:AZ (4.7) BS02 rna ? GO:0002181 ... O77364 26432834
    55 3jbn:Aa (4.7) BS01 rna ? GO:0003735 ... Q8IBY4 26432834
    56 3jbn:Ab (4.7) BS01 rna ? GO:0002181 ... Q8I713 26432834
    57 3jbn:Ac (4.7) BS01 rna ? GO:0003723 ... C0H4L5 26432834
    58 3jbn:Ac (4.7) BS02 rna ? GO:0003723 ... C0H4L5 26432834
    59 3jbn:Ad (4.7) BS01 rna ? GO:0003735 ... Q8II62 26432834
    60 3jbn:Ae (4.7) BS01 rna ? GO:0003735 ... C0H4H3 26432834
    61 3jbn:Ae (4.7) BS02 rna ? GO:0003735 ... C0H4H3 26432834
    62 3jbn:Af (4.7) BS01 rna ? GO:0003735 ... Q8ID50 26432834
    63 3jbn:Ag (4.7) BS01 rna ? GO:0003700 ... C6S3G4 26432834
    64 3jbn:Ag (4.7) BS02 rna ? GO:0003700 ... C6S3G4 26432834
    65 3jbn:Ah (4.7) BS01 rna ? GO:0003735 ... O96184 26432834
    66 3jbn:Ah (4.7) BS02 rna ? GO:0003735 ... O96184 26432834
    67 3jbn:Ai (4.7) BS01 rna ? GO:0003735 ... O97231 26432834
    68 3jbn:B (4.7) BS01 rna ? GO:0003735 ... O97313 26432834
    69 3jbn:C (4.7) BS01 rna ? GO:0003735 ... Q8IJD4 26432834
    70 3jbn:D (4.7) BS01 rna ? GO:0003723 ... Q8IKH8 26432834
    71 3jbn:E (4.7) BS01 rna ? GO:0003723 ... Q8I3R0 26432834
    72 3jbn:F (4.7) BS01 rna ? GO:0003723 ... Q8IIU8 26432834
    73 3jbn:G (4.7) BS01 rna ? GO:0003723 ... Q8IL02 26432834
    74 3jbn:H (4.7) BS01 rna ? GO:0003735 ... Q8IDR9 26432834
    75 3jbn:I (4.7) BS01 rna ? GO:0000028 ... Q8IBN5 26432834
    76 3jbn:J (4.7) BS01 rna ? GO:0003735 ... Q8IET7 26432834
    77 3jbn:K (4.7) BS01 rna ? GO:0003735 ... O77395 26432834
    78 3jbn:L (4.7) BS01 rna ? GO:0000462 ... Q8IM10 26432834
    79 3jbn:L (4.7) BS02 rna ? GO:0000462 ... Q8IM10 26432834
    80 3jbn:M (4.7) BS01 rna ? GO:0000462 ... Q8IAX5 26432834
    81 3jbn:N (4.7) BS01 rna ? GO:0003735 ... Q8IK02 26432834
    82 3jbn:O (4.7) BS01 rna ? N/A Q8IBQ5 26432834
    83 3jbn:P (4.7) BS01 rna N/A GO:0003735 ... N/A 26432834
    84 3jbn:Q (4.7) BS01 rna ? GO:0003735 ... O97248 26432834
    85 3jbn:S (4.7) BS01 rna ? GO:0003676 ... Q8IIA2 26432834
    86 3jbn:T (4.7) BS01 rna ? GO:0003735 ... C0H4K8 26432834
    87 3jbn:U (4.7) BS01 rna ? GO:0003735 ... Q8IDB0 26432834
    88 3jbn:U (4.7) BS02 rna ? GO:0003735 ... Q8IDB0 26432834
    89 3jbn:V (4.7) BS01 rna ? GO:0003735 ... O77381 26432834
    90 3jbn:W (4.7) BS01 rna ? GO:0003735 ... Q8I502 26432834
    91 3jbn:X (4.7) BS01 rna ? GO:0003723 ... C0H5C2 26432834
    92 3jbn:Y (4.7) BS01 rna ? GO:0000028 ... Q8IFP2 26432834
    93 3jbn:Z (4.7) BS01 rna ? GO:0003735 ... Q8IHS5 26432834
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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