Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 116 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jah:A (3.45) BS01 rna ? GO:0002181 ... G1TT27 26245381
    2 3jah:AA (3.45) BS01 rna N/A GO:0003735 ... N/A 26245381
    3 3jah:B (3.45) BS01 rna ? GO:0003723 ... G1TL06 26245381
    4 3jah:BB (3.45) BS01 rna ? GO:0003735 ... G1SS70 26245381
    5 3jah:C (3.45) BS01 rna ? GO:0003735 ... G1SVW5 26245381
    6 3jah:C (3.45) BS02 rna ? GO:0003735 ... G1SVW5 26245381
    7 3jah:CC (3.45) BS01 rna N/A GO:0003723 ... N/A 26245381
    8 3jah:D (3.45) BS01 rna ? GO:0000027 ... P19949 26245381
    9 3jah:D (3.45) BS02 rna ? GO:0000027 ... P19949 26245381
    10 3jah:DD (3.45) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 26245381
    11 3jah:E (3.45) BS01 rna ? GO:0003735 ... G1TG04 26245381
    12 3jah:EE (3.45) BS01 rna ? GO:0003723 ... G1TK17 26245381
    13 3jah:F (3.45) BS01 rna N/A GO:0000463 ... N/A 26245381
    14 3jah:F (3.45) BS02 rna N/A GO:0000463 ... N/A 26245381
    15 3jah:FF (3.45) BS01 rna ? GO:0000028 ... G1TFM5 26245381
    16 3jah:FF (3.45) BS02 rna ? GO:0000028 ... G1TFM5 26245381
    17 3jah:G (3.45) BS01 rna ? GO:0042254 ... G1STW0 26245381
    18 3jah:G (3.45) BS02 rna ? GO:0042254 ... G1STW0 26245381
    19 3jah:GG (3.45) BS01 rna ? GO:0000082 ... G1TM55 26245381
    20 3jah:H (3.45) BS01 rna ? GO:0002181 ... G1SWI6 26245381
    21 3jah:HH (3.45) BS01 rna ? GO:0003735 ... G1SVB0 26245381
    22 3jah:I (3.45) BS01 rna ? GO:0000027 ... B7NZQ2 26245381
    23 3jah:I (3.45) BS02 rna ? GO:0000027 ... B7NZQ2 26245381
    24 3jah:II (3.45) BS01 rna ? GO:0000462 ... G1TJW1 26245381
    25 3jah:II (3.45) BS02 rna ? GO:0000462 ... G1TJW1 26245381
    26 3jah:J (3.45) BS01 rna ? GO:0003723 ... G1TUB8 26245381
    27 3jah:J (3.45) BS02 rna ? GO:0003723 ... G1TUB8 26245381
    28 3jah:J (3.45) BS03 rna ? GO:0003723 ... G1TUB8 26245381
    29 3jah:JJ (3.45) BS01 rna ? GO:0003723 ... B7NZS8 26245381
    30 3jah:KK (3.45) BS01 rna ? N/A G1TPV3 26245381
    31 3jah:L (3.45) BS01 rna N/A GO:0003735 ... N/A 26245381
    32 3jah:L (3.45) BS02 rna N/A GO:0003735 ... N/A 26245381
    33 3jah:LL (3.45) BS01 rna ? GO:0003735 ... G1TRM4 26245381
    34 3jah:LL (3.45) BS02 MG ? GO:0003735 ... G1TRM4 26245381
    35 3jah:M (3.45) BS01 rna ? GO:0003723 ... G1SZ12 26245381
    36 3jah:MM (3.45) BS01 rna ? GO:0003735 ... G1SFR8 26245381
    37 3jah:N (3.45) BS01 rna ? GO:0002181 ... G1T0C1 26245381
    38 3jah:N (3.45) BS02 rna ? GO:0002181 ... G1T0C1 26245381
    39 3jah:NN (3.45) BS01 rna ? GO:0003735 ... G1SP51 26245381
    40 3jah:O (3.45) BS01 rna N/A GO:0003735 ... N/A 26245381
    41 3jah:OO (3.45) BS01 rna ? GO:0000028 ... G1T1F0 26245381
    42 3jah:P (3.45) BS01 peptide N/A GO:0003735 ... N/A 26245381
    43 3jah:P (3.45) BS02 rna N/A GO:0003735 ... N/A 26245381
    44 3jah:P (3.45) BS03 rna N/A GO:0003735 ... N/A 26245381
    45 3jah:PP (3.45) BS01 rna ? GO:0003723 ... G1U0Q2 26245381
    46 3jah:Q (3.45) BS01 rna N/A GO:0003735 ... N/A 26245381
    47 3jah:QQ (3.45) BS01 rna ? GO:0000462 ... G1SGX4 26245381
    48 3jah:R (3.45) BS01 rna N/A GO:0003723 ... N/A 26245381
    49 3jah:R (3.45) BS02 rna N/A GO:0003723 ... N/A 26245381
    50 3jah:RR (3.45) BS01 rna ? GO:0003735 ... G1TU13 26245381
    51 3jah:S (3.45) BS01 rna N/A GO:0003735 ... N/A 26245381
    52 3jah:S (3.45) BS02 rna N/A GO:0003735 ... N/A 26245381
    53 3jah:SS (3.45) BS01 rna ? GO:0003676 ... G1TPG3 26245381
    54 3jah:T (3.45) BS01 rna ? GO:0003735 ... G1SHQ2 26245381
    55 3jah:T (3.45) BS02 rna ? GO:0003735 ... G1SHQ2 26245381
    56 3jah:TT (3.45) BS01 rna ? GO:0000028 ... G1TN62 26245381
    57 3jah:U (3.45) BS01 rna N/A GO:0003735 ... N/A 26245381
    58 3jah:UU (3.45) BS01 rna ? GO:0003723 ... G1SIZ2 26245381
    59 3jah:V (3.45) BS01 rna ? GO:0000122 ... G1T6D1 26245381
    60 3jah:W (3.45) BS01 rna N/A N/A N/A 26245381
    61 3jah:WW (3.45) BS01 rna ? GO:0003735 ... G1TG89 26245381
    62 3jah:X (3.45) BS01 rna ? GO:0003735 ... G1SE76 26245381
    63 3jah:X (3.45) BS02 rna ? GO:0003735 ... G1SE76 26245381
    64 3jah:XX (3.45) BS01 rna ? GO:0003735 ... G1SZ47 26245381
    65 3jah:Y (3.45) BS01 rna ? GO:0002181 ... G1SQH0 26245381
    66 3jah:Y (3.45) BS02 rna ? GO:0002181 ... G1SQH0 26245381
    67 3jah:YY (3.45) BS01 rna ? GO:0003735 ... G1T3D8 26245381
    68 3jah:Z (3.45) BS01 rna ? GO:0003735 ... G1TXF6 26245381
    69 3jah:ZZ (3.45) BS01 rna ? N/A G1TDB3 26245381
    70 3jah:a (3.45) BS01 rna ? GO:0003735 ... G1SNY0 26245381
    71 3jah:aa (3.45) BS01 rna N/A GO:0003735 ... N/A 26245381
    72 3jah:aa (3.45) BS02 ZN N/A GO:0003735 ... N/A 26245381
    73 3jah:b (3.45) BS01 rna ? GO:0003735 ... G1SGR6 26245381
    74 3jah:bb (3.45) BS01 rna ? GO:0000028 ... G1TZ76 26245381
    75 3jah:c (3.45) BS01 rna N/A GO:0003723 ... N/A 26245381
    76 3jah:cc (3.45) BS01 rna ? GO:0003735 ... G1TIB4 26245381
    77 3jah:d (3.45) BS01 rna ? GO:0003735 ... G1SHG0 26245381
    78 3jah:dd (3.45) BS01 rna ? GO:0003735 ... G1U7M4 26245381
    79 3jah:dd (3.45) BS02 ZN ? GO:0003735 ... G1U7M4 26245381
    80 3jah:e (3.45) BS01 rna ? GO:0003735 ... G1TUN8 26245381
    81 3jah:ee (3.45) BS01 rna ? GO:0003735 ... G1T8A2 26245381
    82 3jah:f (3.45) BS01 rna ? GO:0000049 ... G1SF08 26245381
    83 3jah:ff (3.45) BS01 rna ? GO:0003735 ... G1SK22 26245381
    84 3jah:ff (3.45) BS02 ZN ? GO:0003735 ... G1SK22 26245381
    85 3jah:g (3.45) BS01 rna ? GO:0003735 ... G1TXG5 26245381
    86 3jah:g (3.45) BS02 ZN ? GO:0003735 ... G1TXG5 26245381
    87 3jah:gg (3.45) BS01 rna ? GO:0001891 ... G1SJB4 26245381
    88 3jah:h (3.45) BS01 rna ? GO:0000463 ... G1SIT5 26245381
    89 3jah:h (3.45) BS02 rna ? GO:0000463 ... G1SIT5 26245381
    90 3jah:i (3.45) BS01 rna ? GO:0002181 ... G1TTQ5 26245381
    91 3jah:ii (3.45) BS01 rna ? GO:0000184 ... P62495 26245381
    92 3jah:ii (3.45) BS02 rna ? GO:0000184 ... P62495 26245381
    93 3jah:ii (3.45) BS03 rna ? GO:0000184 ... P62495 26245381
    94 3jah:ii (3.45) BS04 rna ? GO:0000184 ... P62495 26245381
    95 3jah:j (3.45) BS01 rna ? GO:0003735 ... U3KPD5 26245381
    96 3jah:j (3.45) BS02 rna ? GO:0003735 ... U3KPD5 26245381
    97 3jah:j (3.45) BS03 ZN ? GO:0003735 ... U3KPD5 26245381
    98 3jah:jj (3.45) BS01 rna ? GO:0000054 ... G1SG72 26245381
    99 3jah:jj (3.45) BS02 rna ? GO:0000054 ... G1SG72 26245381
    100 3jah:jj (3.45) BS03 SF4 ? GO:0000054 ... G1SG72 26245381
    101 3jah:jj (3.45) BS04 SF4 ? GO:0000054 ... G1SG72 26245381
    102 3jah:jj (3.45) BS05 ADP ? GO:0000054 ... G1SG72 26245381
    103 3jah:k (3.45) BS01 rna N/A GO:0003735 ... N/A 26245381
    104 3jah:l (3.45) BS01 rna ? GO:0003735 ... G1SYU7 26245381
    105 3jah:l (3.45) BS02 rna ? GO:0003735 ... G1SYU7 26245381
    106 3jah:m (3.45) BS01 rna N/A GO:0003735 ... N/A 26245381
    107 3jah:m (3.45) BS02 ZN N/A GO:0003735 ... N/A 26245381
    108 3jah:o (3.45) BS01 rna ? GO:0003735 ... G1T040 26245381
    109 3jah:o (3.45) BS02 rna ? GO:0003735 ... G1T040 26245381
    110 3jah:o (3.45) BS03 rna ? GO:0003735 ... G1T040 26245381
    111 3jah:o (3.45) BS04 ZN ? GO:0003735 ... G1T040 26245381
    112 3jah:p (3.45) BS01 rna ? GO:0003735 ... G1SY53 26245381
    113 3jah:p (3.45) BS02 ZN ? GO:0003735 ... G1SY53 26245381
    114 3jah:r (3.45) BS01 rna ? GO:0003735 ... G1U7L1 26245381
    115 3jah:s (3.45) BS01 rna N/A N/A N/A 26245381
    116 3jah:t (3.45) BS01 rna ? GO:0003723 ... G1SMR7 26245381
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218