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BioLiP Library
Download all results in tab-seperated text for 104 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3j7r:1 (3.9) BS01 rna ? GO:0015031 ... A0A4X1TV07 24930395
    2 3j7r:A (3.9) BS01 rna N/A GO:0003723 ... N/A 24930395
    3 3j7r:A (3.9) BS02 rna N/A GO:0003723 ... N/A 24930395
    4 3j7r:B (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    5 3j7r:C (3.9) BS01 rna ? GO:0003735 ... F1SJJ5 24930395
    6 3j7r:C (3.9) BS02 rna ? GO:0003735 ... F1SJJ5 24930395
    7 3j7r:D (3.9) BS01 rna ? GO:0003735 ... A0A287ASD0 24930395
    8 3j7r:D (3.9) BS02 rna ? GO:0003735 ... A0A287ASD0 24930395
    9 3j7r:E (3.9) BS01 rna ? GO:0003735 ... Q2YGT9 24930395
    10 3j7r:F (3.9) BS01 rna N/A GO:0000463 ... N/A 24930395
    11 3j7r:F (3.9) BS02 rna N/A GO:0000463 ... N/A 24930395
    12 3j7r:G (3.9) BS01 rna ? GO:0042254 ... A0A4X1W808 24930395
    13 3j7r:G (3.9) BS02 rna ? GO:0042254 ... A0A4X1W808 24930395
    14 3j7r:H (3.9) BS01 rna ? GO:0003735 ... I3LP78 24930395
    15 3j7r:I (3.9) BS01 rna ? GO:0000027 ... Q29195 24930395
    16 3j7r:I (3.9) BS02 rna ? GO:0000027 ... Q29195 24930395
    17 3j7r:I (3.9) BS03 rna ? GO:0000027 ... Q29195 24930395
    18 3j7r:J (3.9) BS01 rna ? GO:0003723 ... Q29205 24930395
    19 3j7r:J (3.9) BS02 rna ? GO:0003723 ... Q29205 24930395
    20 3j7r:L (3.9) BS01 rna ? GO:0003735 ... A0A4X1TBV3 24930395
    21 3j7r:L (3.9) BS02 rna ? GO:0003735 ... A0A4X1TBV3 24930395
    22 3j7r:M (3.9) BS01 rna ? GO:0003723 ... A1XQU3 24930395
    23 3j7r:N (3.9) BS01 rna ? GO:0002181 ... A0A286ZL65 24930395
    24 3j7r:N (3.9) BS02 rna ? GO:0002181 ... A0A286ZL65 24930395
    25 3j7r:O (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    26 3j7r:P (3.9) BS01 rna ? GO:0003735 ... A0A287B386 24930395
    27 3j7r:P (3.9) BS02 rna ? GO:0003735 ... A0A287B386 24930395
    28 3j7r:Q (3.9) BS01 rna ? GO:0003735 ... A0A4X1W0N5 24930395
    29 3j7r:R (3.9) BS01 rna N/A GO:0003723 ... N/A 24930395
    30 3j7r:S (3.9) BS01 rna ? GO:0003735 ... A0A287APR1 24930395
    31 3j7r:S (3.9) BS02 rna ? GO:0003735 ... A0A287APR1 24930395
    32 3j7r:SA (3.9) BS01 rna ? GO:0000028 ... Q4GWZ2 24930395
    33 3j7r:SB (3.9) BS01 rna ? GO:0003735 ... B6V8C8 24930395
    34 3j7r:SB (3.9) BS02 rna ? GO:0003735 ... B6V8C8 24930395
    35 3j7r:SC (3.9) BS01 rna ? GO:0003723 ... I3LJ87 24930395
    36 3j7r:SD (3.9) BS01 rna 4.2.99.18 GO:0003677 ... Q0Z8U2 24930395
    37 3j7r:SE (3.9) BS01 rna ? GO:0003723 ... A0A287B771 24930395
    38 3j7r:SF (3.9) BS01 rna ? GO:0003723 ... F2Z5E6 24930395
    39 3j7r:SG (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    40 3j7r:SH (3.9) BS01 rna ? GO:0001843 ... A0A287A9Y6 24930395
    41 3j7r:SI (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    42 3j7r:SI (3.9) BS02 rna N/A GO:0003735 ... N/A 24930395
    43 3j7r:SJ (3.9) BS01 rna N/A GO:0003723 ... N/A 24930395
    44 3j7r:SK (3.9) BS01 rna N/A N/A N/A 24930395
    45 3j7r:SL (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    46 3j7r:SL (3.9) BS02 MG N/A GO:0003735 ... N/A 24930395
    47 3j7r:SM (3.9) BS01 rna ? GO:0003735 ... P46405 24930395
    48 3j7r:SN (3.9) BS01 rna ? GO:0003735 ... A0A4X1TFR5 24930395
    49 3j7r:SO (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    50 3j7r:SP (3.9) BS01 rna ? GO:0000028 ... P62844 24930395
    51 3j7r:SQ (3.9) BS01 rna ? GO:0000462 ... Q29201 24930395
    52 3j7r:SR (3.9) BS01 rna ? GO:0003735 ... Q6QAP7 24930395
    53 3j7r:SS (3.9) BS01 rna ? GO:0003676 ... P62272 24930395
    54 3j7r:ST (3.9) BS01 rna ? GO:0003735 ... A0A4X1SDD8 24930395
    55 3j7r:SU (3.9) BS01 rna ? GO:0003723 ... A1XQU9 24930395
    56 3j7r:SW (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    57 3j7r:SX (3.9) BS01 rna ? GO:0002181 ... Q6SA96 24930395
    58 3j7r:SY (3.9) BS01 rna ? GO:0003735 ... A0A4X1SJK8 24930395
    59 3j7r:SZ (3.9) BS01 rna N/A N/A N/A 24930395
    60 3j7r:Sa (3.9) BS01 rna ? GO:0002181 ... P49171 24930395
    61 3j7r:Sa (3.9) BS02 ZN ? GO:0002181 ... P49171 24930395
    62 3j7r:Sb (3.9) BS01 rna ? GO:0003735 ... A0A4X1W2B6 24930395
    63 3j7r:Sc (3.9) BS01 rna ? GO:0000028 ... Q6QAT1 24930395
    64 3j7r:Sd (3.9) BS01 rna ? GO:0002181 ... Q6QAP6 24930395
    65 3j7r:Se (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    66 3j7r:Sf (3.9) BS01 rna ? GO:0003735 ... A0A4X1W6H9 24930395
    67 3j7r:Sg (3.9) BS01 rna ? GO:0001891 ... P63246 24930395
    68 3j7r:T (3.9) BS01 rna ? GO:0003735 ... P49666 24930395
    69 3j7r:T (3.9) BS02 rna ? GO:0003735 ... P49666 24930395
    70 3j7r:U (3.9) BS01 rna ? GO:0002181 ... P67985 24930395
    71 3j7r:V (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    72 3j7r:V (3.9) BS02 rna N/A GO:0003735 ... N/A 24930395
    73 3j7r:W (3.9) BS01 rna ? GO:0005737 ... A0A4X1SH42 24930395
    74 3j7r:X (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    75 3j7r:X (3.9) BS02 rna N/A GO:0003735 ... N/A 24930395
    76 3j7r:Y (3.9) BS01 rna ? GO:0003723 ... A0A4X1V977 24930395
    77 3j7r:Y (3.9) BS02 rna ? GO:0003723 ... A0A4X1V977 24930395
    78 3j7r:Z (3.9) BS01 rna ? GO:0003735 ... A1XQU5 24930395
    79 3j7r:a (3.9) BS01 rna ? GO:0003735 ... A0A4X1SN08 24930395
    80 3j7r:b (3.9) BS01 rna ? GO:0002181 ... Q95281 24930395
    81 3j7r:c (3.9) BS01 rna ? GO:0003723 ... A0A4X1TXJ8 24930395
    82 3j7r:d (3.9) BS01 rna ? GO:0002181 ... P62901 24930395
    83 3j7r:e (3.9) BS01 rna ? GO:0002181 ... Q6QAT0 24930395
    84 3j7r:f (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    85 3j7r:g (3.9) BS01 rna ? GO:0003735 ... Q29223 24930395
    86 3j7r:h (3.9) BS01 rna ? GO:0000463 ... Q29361 24930395
    87 3j7r:h (3.9) BS02 rna ? GO:0000463 ... Q29361 24930395
    88 3j7r:i (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    89 3j7r:j (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    90 3j7r:j (3.9) BS02 rna N/A GO:0003735 ... N/A 24930395
    91 3j7r:j (3.9) BS03 ZN N/A GO:0003735 ... N/A 24930395
    92 3j7r:k (3.9) BS01 rna ? GO:0003735 ... A0A4X1VLH7 24930395
    93 3j7r:l (3.9) BS01 rna ? GO:0002181 ... K7GP63 24930395
    94 3j7r:l (3.9) BS02 rna ? GO:0002181 ... K7GP63 24930395
    95 3j7r:m (3.9) BS01 rna ? GO:0003735 ... P63053 24930395
    96 3j7r:m (3.9) BS02 ZN ? GO:0003735 ... P63053 24930395
    97 3j7r:o (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    98 3j7r:o (3.9) BS02 rna N/A GO:0003735 ... N/A 24930395
    99 3j7r:o (3.9) BS03 ZN N/A GO:0003735 ... N/A 24930395
    100 3j7r:p (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    101 3j7r:p (3.9) BS02 rna N/A GO:0003735 ... N/A 24930395
    102 3j7r:r (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    103 3j7r:z (3.9) BS01 rna N/A GO:0003723 ... N/A 24930395
    104 3j7r:z (3.9) BS02 rna N/A GO:0003723 ... N/A 24930395
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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