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BioLiP
Download all results in tab-seperated text for 98 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3j78:10 (6.3) BS01 rna ? GO:0000054 ... Q08745 25043550
    2 3j78:11 (6.3) BS01 rna ? GO:0000028 ... P0CX47 25043550
    3 3j78:12 (6.3) BS01 rna ? GO:0000028 ... P48589 25043550
    4 3j78:13 (6.3) BS01 rna ? GO:0000462 ... P05756 25043550
    5 3j78:14 (6.3) BS01 rna ? GO:0000028 ... P06367 25043550
    6 3j78:15 (6.3) BS01 rna ? GO:0000028 ... Q01855 25043550
    7 3j78:16 (6.3) BS01 rna ? GO:0000462 ... P0CX51 25043550
    8 3j78:17 (6.3) BS01 rna ? GO:0000028 ... P02407 25043550
    9 3j78:18 (6.3) BS01 rna ? GO:0000054 ... P0CX55 25043550
    10 3j78:19 (6.3) BS01 rna ? GO:0000028 ... P07280 25043550
    11 3j78:20 (6.3) BS01 rna ? GO:0000462 ... P38701 25043550
    12 3j78:21 (6.3) BS01 rna ? GO:0000447 ... P0C0V8 25043550
    13 3j78:22 (6.3) BS01 rna ? GO:0002181 ... P0C0W1 25043550
    14 3j78:23 (6.3) BS01 rna ? GO:0000462 ... P0CX29 25043550
    15 3j78:24 (6.3) BS01 rna ? GO:0000462 ... P0CX31 25043550
    16 3j78:25 (6.3) BS01 rna ? GO:0002181 ... Q3E792 25043550
    17 3j78:26 (6.3) BS01 rna ? GO:0000054 ... P39938 25043550
    18 3j78:27 (6.3) BS01 rna ? GO:0000028 ... P35997 25043550
    19 3j78:28 (6.3) BS01 rna ? GO:0000028 ... Q3E7X9 25043550
    20 3j78:29 (6.3) BS01 rna ? GO:0002181 ... P41057 25043550
    21 3j78:30 (6.3) BS01 rna ? GO:0002181 ... P0CX33 25043550
    22 3j78:31 (6.3) BS01 rna ? GO:0000028 ... P05759 25043550
    23 3j78:60 (6.3) BS01 rna ? GO:0000027 ... P41805 25043550
    24 3j78:60 (6.3) BS02 rna ? GO:0000027 ... P41805 25043550
    25 3j78:61 (6.3) BS01 rna ? GO:0000027 ... P0C0W9 25043550
    26 3j78:61 (6.3) BS02 rna ? GO:0000027 ... P0C0W9 25043550
    27 3j78:62 (6.3) BS01 rna ? GO:0000027 ... P0CX53 25043550
    28 3j78:63 (6.3) BS01 rna ? GO:0002181 ... Q12690 25043550
    29 3j78:63 (6.3) BS02 rna ? GO:0002181 ... Q12690 25043550
    30 3j78:64 (6.3) BS01 rna ? GO:0000027 ... P36105 25043550
    31 3j78:65 (6.3) BS01 rna ? GO:0002181 ... P05748 25043550
    32 3j78:65 (6.3) BS02 rna ? GO:0002181 ... P05748 25043550
    33 3j78:66 (6.3) BS01 rna ? GO:0000470 ... P26784 25043550
    34 3j78:67 (6.3) BS01 rna ? GO:0000448 ... P05740 25043550
    35 3j78:67 (6.3) BS02 rna ? GO:0000448 ... P05740 25043550
    36 3j78:68 (6.3) BS01 rna ? GO:0002181 ... P0CX49 25043550
    37 3j78:69 (6.3) BS01 rna ? GO:0002181 ... P0CX82 25043550
    38 3j78:69 (6.3) BS02 rna ? GO:0002181 ... P0CX82 25043550
    39 3j78:70 (6.3) BS01 rna ? GO:0002181 ... P0CX23 25043550
    40 3j78:70 (6.3) BS02 rna ? GO:0002181 ... P0CX23 25043550
    41 3j78:71 (6.3) BS01 rna ? GO:0002181 ... Q02753 25043550
    42 3j78:71 (6.3) BS02 rna ? GO:0002181 ... Q02753 25043550
    43 3j78:72 (6.3) BS01 rna ? GO:0002181 ... P05749 25043550
    44 3j78:73 (6.3) BS01 rna ? GO:0002181 ... P0CX41 25043550
    45 3j78:74 (6.3) BS01 rna ? GO:0002181 ... P04449 25043550
    46 3j78:75 (6.3) BS01 rna ? GO:0000027 ... P04456 25043550
    47 3j78:75 (6.3) BS02 rna ? GO:0000027 ... P04456 25043550
    48 3j78:76 (6.3) BS01 rna ? GO:0002181 ... P05743 25043550
    49 3j78:76 (6.3) BS02 rna ? GO:0002181 ... P05743 25043550
    50 3j78:77 (6.3) BS01 rna ? GO:0002181 ... P0C2H6 25043550
    51 3j78:78 (6.3) BS01 rna ? GO:0002181 ... P02406 25043550
    52 3j78:79 (6.3) BS01 rna ? GO:0002181 ... P05747 25043550
    53 3j78:80 (6.3) BS01 rna ? GO:0002181 ... P14120 25043550
    54 3j78:81 (6.3) BS01 rna ? GO:0002181 ... P0C2H8 25043550
    55 3j78:82 (6.3) BS01 rna ? GO:0002181 ... P38061 25043550
    56 3j78:83 (6.3) BS01 rna ? GO:0000027 ... P05744 25043550
    57 3j78:84 (6.3) BS01 rna ? GO:0002181 ... P87262 25043550
    58 3j78:85 (6.3) BS01 rna ? GO:0000463 ... P0CX84 25043550
    59 3j78:85 (6.3) BS02 rna ? GO:0000463 ... P0CX84 25043550
    60 3j78:86 (6.3) BS01 rna ? GO:0002181 ... P05745 25043550
    61 3j78:87 (6.3) BS01 rna ? GO:0000448 ... P49166 25043550
    62 3j78:87 (6.3) BS02 rna ? GO:0000448 ... P49166 25043550
    63 3j78:88 (6.3) BS01 rna ? GO:0002181 ... P49167 25043550
    64 3j78:89 (6.3) BS01 rna ? GO:0002181 ... P04650 25043550
    65 3j78:89 (6.3) BS02 rna ? GO:0002181 ... P04650 25043550
    66 3j78:90 (6.3) BS01 rna ? GO:0000027 ... P0CH08 25043550
    67 3j78:92 (6.3) BS01 rna ? GO:0002181 ... P0CX27 25043550
    68 3j78:92 (6.3) BS02 rna ? GO:0002181 ... P0CX27 25043550
    69 3j78:93 (6.3) BS01 rna ? GO:0002181 ... P0CX25 25043550
    70 3j78:L1 (6.3) BS01 rna ? GO:0000055 ... P0CX43 25043550
    71 3j78:L2 (6.3) BS01 rna ? GO:0002181 ... P0CX45 25043550
    72 3j78:L2 (6.3) BS02 rna ? GO:0002181 ... P0CX45 25043550
    73 3j78:L3 (6.3) BS01 rna ? GO:0000027 ... P14126 25043550
    74 3j78:L4 (6.3) BS01 rna ? GO:0002181 ... P10664 25043550
    75 3j78:L4 (6.3) BS02 rna ? GO:0002181 ... P10664 25043550
    76 3j78:L5 (6.3) BS01 rna ? GO:0000027 ... P26321 25043550
    77 3j78:L5 (6.3) BS02 rna ? GO:0000027 ... P26321 25043550
    78 3j78:L6 (6.3) BS01 rna ? GO:0000027 ... Q02326 25043550
    79 3j78:L7 (6.3) BS01 rna ? GO:0000463 ... P05737 25043550
    80 3j78:L7 (6.3) BS02 rna ? GO:0000463 ... P05737 25043550
    81 3j78:L8 (6.3) BS01 rna ? GO:0000470 ... P17076 25043550
    82 3j78:L8 (6.3) BS02 rna ? GO:0000470 ... P17076 25043550
    83 3j78:L9 (6.3) BS01 rna ? GO:0002181 ... P05738 25043550
    84 3j78:P0 (6.3) BS01 rna ? GO:0000027 ... P05317 25043550
    85 3j78:RC (6.3) BS01 rna ? GO:0001965 ... P38011 25043550
    86 3j78:S0 (6.3) BS01 rna ? GO:0000028 ... P32905 25043550
    87 3j78:S1 (6.3) BS01 rna ? GO:0000462 ... P33442 25043550
    88 3j78:S2 (6.3) BS01 rna ? GO:0000054 ... P25443 25043550
    89 3j78:S3 (6.3) BS01 rna ? GO:0000054 ... P05750 25043550
    90 3j78:S4 (6.3) BS01 rna ? GO:0002181 ... P0CX35 25043550
    91 3j78:S5 (6.3) BS01 rna ? GO:0000028 ... P26783 25043550
    92 3j78:S5 (6.3) BS02 rna ? GO:0000028 ... P26783 25043550
    93 3j78:S5 (6.3) BS03 rna ? GO:0000028 ... P26783 25043550
    94 3j78:S6 (6.3) BS01 rna ? GO:0000462 ... P0CX37 25043550
    95 3j78:S7 (6.3) BS01 rna ? GO:0002181 ... P26786 25043550
    96 3j78:S8 (6.3) BS01 rna ? GO:0000462 ... P0CX39 25043550
    97 3j78:S8 (6.3) BS02 rna ? GO:0000462 ... P0CX39 25043550
    98 3j78:S9 (6.3) BS01 rna ? GO:0000462 ... O13516 25043550
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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