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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3j6g:A (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    2 3j6g:B (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    3 3j6g:B (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    4 3j6g:C (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    5 3j6g:D (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    6 3j6g:D (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    7 3j6g:E (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    8 3j6g:F (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    9 3j6g:F (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    10 3j6g:G (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    11 3j6g:H (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    12 3j6g:H (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    13 3j6g:I (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    14 3j6g:J (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    15 3j6g:J (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    16 3j6g:K (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    17 3j6g:L (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    18 3j6g:L (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    19 3j6g:M (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    20 3j6g:N (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    21 3j6g:N (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    22 3j6g:O (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    23 3j6g:P (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    24 3j6g:P (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    25 3j6g:Q (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    26 3j6g:R (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    27 3j6g:R (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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