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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3g6e:1 (2.7) BS01 rna ? GO:0003723 ... P32410 19362093
    2 3g6e:2 (2.7) BS01 rna ? GO:0003735 ... P22452 19362093
    3 3g6e:3 (2.7) BS01 rna ? GO:0000049 ... P32411 19362093
    4 3g6e:A (2.7) BS01 rna ? GO:0002181 ... P20276 19362093
    5 3g6e:A (2.7) BS02 MG ? GO:0002181 ... P20276 19362093
    6 3g6e:B (2.7) BS01 rna ? GO:0003723 ... P20279 19362093
    7 3g6e:C (2.7) BS01 rna ? GO:0003723 ... P12735 19362093
    8 3g6e:D (2.7) BS01 rna ? GO:0000049 ... P14124 19362093
    9 3g6e:D (2.7) BS02 rna ? GO:0000049 ... P14124 19362093
    10 3g6e:E (2.7) BS01 rna ? GO:0002181 ... P14135 19362093
    11 3g6e:F (2.7) BS01 rna ? GO:0001682 ... P12743 19362093
    12 3g6e:H (2.7) BS01 rna ? GO:0000027 ... P60617 19362093
    13 3g6e:I (2.7) BS01 rna ? GO:0003735 ... P14122 19362093
    14 3g6e:J (2.7) BS01 rna ? GO:0003729 ... P29198 19362093
    15 3g6e:K (2.7) BS01 rna ? GO:0003735 ... P22450 19362093
    16 3g6e:L (2.7) BS01 rna ? GO:0003735 ... P12737 19362093
    17 3g6e:M (2.7) BS01 rna ? GO:0002181 ... P60618 19362093
    18 3g6e:N (2.7) BS01 rna ? GO:0000027 ... P14123 19362093
    19 3g6e:N (2.7) BS02 rna ? GO:0000027 ... P14123 19362093
    20 3g6e:O (2.7) BS01 rna ? GO:0003723 ... P12733 19362093
    21 3g6e:P (2.7) BS01 rna ? GO:0003723 ... P14119 19362093
    22 3g6e:Q (2.7) BS01 rna ? GO:0003735 ... P12734 19362093
    23 3g6e:Q (2.7) BS02 rna ? GO:0003735 ... P12734 19362093
    24 3g6e:R (2.7) BS01 rna ? GO:0002181 ... P10970 19362093
    25 3g6e:S (2.7) BS01 rna ? GO:0000027 ... P12732 19362093
    26 3g6e:T (2.7) BS01 rna ? GO:0002181 ... P10972 19362093
    27 3g6e:T (2.7) BS02 MG ? GO:0002181 ... P10972 19362093
    28 3g6e:U (2.7) BS01 rna ? GO:0003735 ... P14116 19362093
    29 3g6e:V (2.7) BS01 rna ? GO:0003735 ... P10971 19362093
    30 3g6e:W (2.7) BS01 rna ? GO:0000463 ... P14121 19362093
    31 3g6e:W (2.7) BS02 rna ? GO:0000463 ... P14121 19362093
    32 3g6e:X (2.7) BS01 rna ? GO:0003735 ... P18138 19362093
    33 3g6e:Y (2.7) BS01 rna ? GO:0003735 ... P12736 19362093
    34 3g6e:Y (2.7) BS02 MG ? GO:0003735 ... P12736 19362093
    35 3g6e:Z (2.7) BS01 rna ? GO:0003735 ... P60619 19362093
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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