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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3g4s:1 (3.2) BS01 rna ? GO:0003723 ... P32410 19362093
    2 3g4s:2 (3.2) BS01 rna ? GO:0003735 ... P22452 19362093
    3 3g4s:3 (3.2) BS01 rna ? GO:0000049 ... P32411 19362093
    4 3g4s:A (3.2) BS01 rna ? GO:0002181 ... P20276 19362093
    5 3g4s:A (3.2) BS02 MG ? GO:0002181 ... P20276 19362093
    6 3g4s:B (3.2) BS01 rna ? GO:0003723 ... P20279 19362093
    7 3g4s:C (3.2) BS01 rna ? GO:0003723 ... P12735 19362093
    8 3g4s:C (3.2) BS02 MG ? GO:0003723 ... P12735 19362093
    9 3g4s:D (3.2) BS01 rna ? GO:0000049 ... P14124 19362093
    10 3g4s:D (3.2) BS02 rna ? GO:0000049 ... P14124 19362093
    11 3g4s:E (3.2) BS01 rna ? GO:0002181 ... P14135 19362093
    12 3g4s:F (3.2) BS01 rna ? GO:0001682 ... P12743 19362093
    13 3g4s:H (3.2) BS01 rna ? GO:0000027 ... P60617 19362093
    14 3g4s:I (3.2) BS01 rna ? GO:0003735 ... P14122 19362093
    15 3g4s:J (3.2) BS01 rna ? GO:0003729 ... P29198 19362093
    16 3g4s:K (3.2) BS01 rna ? GO:0003735 ... P22450 19362093
    17 3g4s:L (3.2) BS01 rna ? GO:0003735 ... P12737 19362093
    18 3g4s:M (3.2) BS01 rna ? GO:0002181 ... P60618 19362093
    19 3g4s:N (3.2) BS01 rna ? GO:0000027 ... P14123 19362093
    20 3g4s:N (3.2) BS02 rna ? GO:0000027 ... P14123 19362093
    21 3g4s:O (3.2) BS01 rna ? GO:0003723 ... P12733 19362093
    22 3g4s:P (3.2) BS01 rna ? GO:0003723 ... P14119 19362093
    23 3g4s:Q (3.2) BS01 rna ? GO:0003735 ... P12734 19362093
    24 3g4s:Q (3.2) BS02 rna ? GO:0003735 ... P12734 19362093
    25 3g4s:R (3.2) BS01 rna ? GO:0002181 ... P10970 19362093
    26 3g4s:S (3.2) BS01 rna ? GO:0000027 ... P12732 19362093
    27 3g4s:T (3.2) BS01 rna ? GO:0002181 ... P10972 19362093
    28 3g4s:T (3.2) BS02 MG ? GO:0002181 ... P10972 19362093
    29 3g4s:U (3.2) BS01 rna ? GO:0003735 ... P14116 19362093
    30 3g4s:V (3.2) BS01 rna ? GO:0003735 ... P10971 19362093
    31 3g4s:W (3.2) BS01 rna ? GO:0000463 ... P14121 19362093
    32 3g4s:W (3.2) BS02 rna ? GO:0000463 ... P14121 19362093
    33 3g4s:X (3.2) BS01 rna ? GO:0003735 ... P18138 19362093
    34 3g4s:Y (3.2) BS01 rna ? GO:0003735 ... P12736 19362093
    35 3g4s:Z (3.2) BS01 rna ? GO:0003735 ... P60619 19362093
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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