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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3d38:C (3.21) BS01 HEC ? GO:0005506 ... P07173 18831551
    2 3d38:C (3.21) BS02 HEC ? GO:0005506 ... P07173 18831551
    3 3d38:C (3.21) BS03 HEC ? GO:0005506 ... P07173 18831551
    4 3d38:C (3.21) BS04 HEC ? GO:0005506 ... P07173 18831551
    5 3d38:L (3.21) BS01 BCB ? GO:0009772 ... P06009 18831551
    6 3d38:L (3.21) BS02 BCB ? GO:0009772 ... P06009 18831551
    7 3d38:L (3.21) BS03 BPB ? GO:0009772 ... P06009 18831551
    8 3d38:L (3.21) BS04 UQ1 ? GO:0009772 ... P06009 18831551
    9 3d38:L (3.21) BS05 FE2 ? GO:0009772 ... P06009 18831551
    10 3d38:L (3.21) BS06 MQ9 ? GO:0009772 ... P06009 18831551
    11 3d38:L (3.21) BS07 BCB ? GO:0009772 ... P06009 18831551
    12 3d38:L (3.21) BS08 BPB ? GO:0009772 ... P06009 18831551
    13 3d38:M (3.21) BS01 BCB ? GO:0009772 ... P06010 18831551
    14 3d38:M (3.21) BS02 BPB ? GO:0009772 ... P06010 18831551
    15 3d38:M (3.21) BS03 UQ1 ? GO:0009772 ... P06010 18831551
    16 3d38:M (3.21) BS04 FE2 ? GO:0009772 ... P06010 18831551
    17 3d38:M (3.21) BS05 MQ9 ? GO:0009772 ... P06010 18831551
    18 3d38:M (3.21) BS06 BCB ? GO:0009772 ... P06010 18831551
    19 3d38:M (3.21) BS07 BCB ? GO:0009772 ... P06010 18831551
    20 3d38:M (3.21) BS08 BPB ? GO:0009772 ... P06010 18831551
    21 3d38:M (3.21) BS09 NS5 ? GO:0009772 ... P06010 18831551
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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