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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3cmx:A (3.4) BS01 dna ? GO:0000725 ... P0A7G6 18497818
    2 3cmx:A (3.4) BS02 dna ? GO:0000725 ... P0A7G6 18497818
    3 3cmx:A (3.4) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    4 3cmx:A (3.4) BS04 ALF ? GO:0000725 ... P0A7G6 18497818
    5 3cmx:A (3.4) BS05 MG ? GO:0000725 ... P0A7G6 18497818
    6 3cmx:A (3.4) BS06 ALF ? GO:0000725 ... P0A7G6 18497818
    7 3cmx:A (3.4) BS07 MG ? GO:0000725 ... P0A7G6 18497818
    8 3cmx:A (3.4) BS08 ALF ? GO:0000725 ... P0A7G6 18497818
    9 3cmx:A (3.4) BS09 MG ? GO:0000725 ... P0A7G6 18497818
    10 3cmx:A (3.4) BS10 ALF ? GO:0000725 ... P0A7G6 18497818
    11 3cmx:A (3.4) BS11 MG ? GO:0000725 ... P0A7G6 18497818
    12 3cmx:A (3.4) BS12 ALF ? GO:0000725 ... P0A7G6 18497818
    13 3cmx:A (3.4) BS13 ADP ? GO:0000725 ... P0A7G6 18497818
    14 3cmx:A (3.4) BS14 ADP ? GO:0000725 ... P0A7G6 18497818
    15 3cmx:A (3.4) BS15 ADP ? GO:0000725 ... P0A7G6 18497818
    16 3cmx:A (3.4) BS16 ADP ? GO:0000725 ... P0A7G6 18497818
    17 3cmx:A (3.4) BS17 ADP ? GO:0000725 ... P0A7G6 18497818
    18 3cmx:D (3.4) BS01 dna ? GO:0000725 ... P0A7G6 18497818
    19 3cmx:D (3.4) BS02 dna ? GO:0000725 ... P0A7G6 18497818
    20 3cmx:D (3.4) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    21 3cmx:D (3.4) BS04 ALF ? GO:0000725 ... P0A7G6 18497818
    22 3cmx:D (3.4) BS05 MG ? GO:0000725 ... P0A7G6 18497818
    23 3cmx:D (3.4) BS06 ALF ? GO:0000725 ... P0A7G6 18497818
    24 3cmx:D (3.4) BS07 MG ? GO:0000725 ... P0A7G6 18497818
    25 3cmx:D (3.4) BS08 ALF ? GO:0000725 ... P0A7G6 18497818
    26 3cmx:D (3.4) BS09 MG ? GO:0000725 ... P0A7G6 18497818
    27 3cmx:D (3.4) BS10 ALF ? GO:0000725 ... P0A7G6 18497818
    28 3cmx:D (3.4) BS11 MG ? GO:0000725 ... P0A7G6 18497818
    29 3cmx:D (3.4) BS12 ALF ? GO:0000725 ... P0A7G6 18497818
    30 3cmx:D (3.4) BS13 ADP ? GO:0000725 ... P0A7G6 18497818
    31 3cmx:D (3.4) BS14 ADP ? GO:0000725 ... P0A7G6 18497818
    32 3cmx:D (3.4) BS15 ADP ? GO:0000725 ... P0A7G6 18497818
    33 3cmx:D (3.4) BS16 ADP ? GO:0000725 ... P0A7G6 18497818
    34 3cmx:D (3.4) BS17 ADP ? GO:0000725 ... P0A7G6 18497818
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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