BioLiP

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National University of Singapore

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BioLiP

Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

<< < 1 > >>

#	PDB (Resolution Å)	Site #	Ligand	EC number	GO terms	UniProt	PubMed	Binding affinity
1	3bm4:A (2.0)	BS01	MG	2.7.7.96 3.6.1.13 3.6.1.58	GO:0000287 ...	Q9UKK9	18462755
2	3bm4:A (2.0)	BS02	MG	2.7.7.96 3.6.1.13 3.6.1.58	GO:0000287 ...	Q9UKK9	18462755
3	3bm4:A (2.0)	BS03	ADV	2.7.7.96 3.6.1.13 3.6.1.58	GO:0000287 ...	Q9UKK9	18462755
4	3bm4:A (2.0)	BS04	ADV	2.7.7.96 3.6.1.13 3.6.1.58	GO:0000287 ...	Q9UKK9	18462755
5	3bm4:B (2.0)	BS01	MG	2.7.7.96 3.6.1.13 3.6.1.58	GO:0000287 ...	Q9UKK9	18462755
6	3bm4:B (2.0)	BS02	MG	2.7.7.96 3.6.1.13 3.6.1.58	GO:0000287 ...	Q9UKK9	18462755
7	3bm4:B (2.0)	BS03	ADV	2.7.7.96 3.6.1.13 3.6.1.58	GO:0000287 ...	Q9UKK9	18462755
8	3bm4:B (2.0)	BS04	ADV	2.7.7.96 3.6.1.13 3.6.1.58	GO:0000287 ...	Q9UKK9	18462755

Reference:

Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).

Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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