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BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2qa4:1 (3.0) BS01 rna ? GO:0003723 ... P32410 17599351
    2 2qa4:2 (3.0) BS01 rna ? GO:0003735 ... P22452 17599351
    3 2qa4:3 (3.0) BS01 rna ? GO:0000049 ... P32411 17599351
    4 2qa4:3 (3.0) BS02 MG ? GO:0000049 ... P32411 17599351
    5 2qa4:A (3.0) BS01 rna ? GO:0002181 ... P20276 17599351
    6 2qa4:A (3.0) BS02 MG ? GO:0002181 ... P20276 17599351
    7 2qa4:A (3.0) BS03 MG ? GO:0002181 ... P20276 17599351
    8 2qa4:B (3.0) BS01 rna ? GO:0003723 ... P20279 17599351
    9 2qa4:C (3.0) BS01 rna ? GO:0003723 ... P12735 17599351
    10 2qa4:D (3.0) BS01 rna ? GO:0000049 ... P14124 17599351
    11 2qa4:D (3.0) BS02 rna ? GO:0000049 ... P14124 17599351
    12 2qa4:E (3.0) BS01 rna ? GO:0002181 ... P14135 17599351
    13 2qa4:F (3.0) BS01 rna ? GO:0001682 ... P12743 17599351
    14 2qa4:G (3.0) BS01 rna ? GO:0000027 ... P15825 17599351
    15 2qa4:H (3.0) BS01 rna ? GO:0000027 ... P60617 17599351
    16 2qa4:I (3.0) BS01 rna ? GO:0003735 ... P14122 17599351
    17 2qa4:J (3.0) BS01 rna ? GO:0003729 ... P29198 17599351
    18 2qa4:K (3.0) BS01 rna ? GO:0003735 ... P22450 17599351
    19 2qa4:L (3.0) BS01 rna ? GO:0003735 ... P12737 17599351
    20 2qa4:M (3.0) BS01 rna ? GO:0002181 ... P60618 17599351
    21 2qa4:N (3.0) BS01 rna ? GO:0000027 ... P14123 17599351
    22 2qa4:N (3.0) BS02 rna ? GO:0000027 ... P14123 17599351
    23 2qa4:O (3.0) BS01 rna ? GO:0003723 ... P12733 17599351
    24 2qa4:P (3.0) BS01 rna ? GO:0003723 ... P14119 17599351
    25 2qa4:Q (3.0) BS01 rna ? GO:0003735 ... P12734 17599351
    26 2qa4:Q (3.0) BS02 rna ? GO:0003735 ... P12734 17599351
    27 2qa4:R (3.0) BS01 rna ? GO:0002181 ... P10970 17599351
    28 2qa4:S (3.0) BS01 rna ? GO:0000027 ... P12732 17599351
    29 2qa4:T (3.0) BS01 rna ? GO:0002181 ... P10972 17599351
    30 2qa4:T (3.0) BS02 MG ? GO:0002181 ... P10972 17599351
    31 2qa4:U (3.0) BS01 rna ? GO:0003735 ... P14116 17599351
    32 2qa4:V (3.0) BS01 rna ? GO:0003735 ... P10971 17599351
    33 2qa4:W (3.0) BS01 rna ? GO:0000463 ... P14121 17599351
    34 2qa4:W (3.0) BS02 rna ? GO:0000463 ... P14121 17599351
    35 2qa4:X (3.0) BS01 rna ? GO:0002181 ... P18138 17599351
    36 2qa4:Y (3.0) BS01 rna ? GO:0000166 ... P12736 17599351
    37 2qa4:Y (3.0) BS02 MG ? GO:0000166 ... P12736 17599351
    38 2qa4:Z (3.0) BS01 rna ? GO:0003735 ... P60619 17599351
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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