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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2a3x:A (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    2 2a3x:A (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    3 2a3x:B (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    4 2a3x:B (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    5 2a3x:C (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    6 2a3x:C (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    7 2a3x:C (3.0) BS03 CPK ? GO:0001849 ... P02743 16036920
    8 2a3x:D (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    9 2a3x:D (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    10 2a3x:D (3.0) BS03 CPK ? GO:0001849 ... P02743 16036920 PDBbind: -logKd/Ki=6.92, IC50=0.12uM
    11 2a3x:E (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    12 2a3x:E (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    13 2a3x:E (3.0) BS03 CPK ? GO:0001849 ... P02743 16036920
    14 2a3x:F (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    15 2a3x:F (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    16 2a3x:G (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    17 2a3x:G (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    18 2a3x:H (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    19 2a3x:H (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    20 2a3x:H (3.0) BS03 CPK ? GO:0001849 ... P02743 16036920
    21 2a3x:I (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    22 2a3x:I (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    23 2a3x:I (3.0) BS03 CPK ? GO:0001849 ... P02743 16036920 PDBbind: -logKd/Ki=6.92, IC50=0.12uM
    24 2a3x:J (3.0) BS01 CPK ? GO:0001849 ... P02743 16036920
    25 2a3x:J (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    26 2a3x:J (3.0) BS03 CA ? GO:0001849 ... P02743 16036920
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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