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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1vqn:1 (2.4) BS01 rna ? GO:0003723 ... P32410 16306996
    2 1vqn:2 (2.4) BS01 rna ? GO:0003735 ... P22452 16306996
    3 1vqn:3 (2.4) BS01 rna ? GO:0000049 ... P32411 16306996
    4 1vqn:A (2.4) BS01 rna ? GO:0002181 ... P20276 16306996
    5 1vqn:A (2.4) BS02 MG ? GO:0002181 ... P20276 16306996
    6 1vqn:A (2.4) BS03 MG ? GO:0002181 ... P20276 16306996
    7 1vqn:B (2.4) BS01 rna ? GO:0003723 ... P20279 16306996
    8 1vqn:C (2.4) BS01 rna ? GO:0003723 ... P12735 16306996
    9 1vqn:D (2.4) BS01 rna ? GO:0000049 ... P14124 16306996
    10 1vqn:D (2.4) BS02 rna ? GO:0000049 ... P14124 16306996
    11 1vqn:E (2.4) BS01 rna ? GO:0002181 ... P14135 16306996
    12 1vqn:F (2.4) BS01 rna ? GO:0001682 ... P12743 16306996
    13 1vqn:H (2.4) BS01 rna ? GO:0000027 ... P60617 16306996
    14 1vqn:I (2.4) BS01 rna ? GO:0003735 ... P14122 16306996
    15 1vqn:J (2.4) BS01 rna ? GO:0003729 ... P29198 16306996
    16 1vqn:K (2.4) BS01 rna ? GO:0003735 ... P22450 16306996
    17 1vqn:L (2.4) BS01 rna ? GO:0003735 ... P12737 16306996
    18 1vqn:M (2.4) BS01 rna ? GO:0002181 ... P60618 16306996
    19 1vqn:N (2.4) BS01 rna ? GO:0000027 ... P14123 16306996
    20 1vqn:N (2.4) BS02 rna ? GO:0000027 ... P14123 16306996
    21 1vqn:O (2.4) BS01 rna ? GO:0003723 ... P12733 16306996
    22 1vqn:P (2.4) BS01 rna ? GO:0003723 ... P14119 16306996
    23 1vqn:Q (2.4) BS01 rna ? GO:0003735 ... P12734 16306996
    24 1vqn:Q (2.4) BS02 rna ? GO:0003735 ... P12734 16306996
    25 1vqn:R (2.4) BS01 rna ? GO:0002181 ... P10970 16306996
    26 1vqn:S (2.4) BS01 rna ? GO:0000027 ... P12732 16306996
    27 1vqn:T (2.4) BS01 rna ? GO:0002181 ... P10972 16306996
    28 1vqn:T (2.4) BS02 MG ? GO:0002181 ... P10972 16306996
    29 1vqn:U (2.4) BS01 rna ? GO:0003735 ... P14116 16306996
    30 1vqn:V (2.4) BS01 rna ? GO:0003735 ... P10971 16306996
    31 1vqn:W (2.4) BS01 rna ? GO:0000463 ... P14121 16306996
    32 1vqn:W (2.4) BS02 rna ? GO:0000463 ... P14121 16306996
    33 1vqn:X (2.4) BS01 rna ? GO:0002181 ... P18138 16306996
    34 1vqn:Y (2.4) BS01 rna ? GO:0000166 ... P12736 16306996
    35 1vqn:Y (2.4) BS02 MG ? GO:0000166 ... P12736 16306996
    36 1vqn:Z (2.4) BS01 rna ? GO:0003735 ... P60619 16306996
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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