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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1n33:B (3.35) BS01 rna ? GO:0003735 ... P80371 12464183 PDBbind: Kd=86uM
    2 1n33:C (3.35) BS01 rna ? GO:0003676 ... P80372 12464183 PDBbind: Kd=86uM
    3 1n33:D (3.35) BS01 rna ? GO:0003723 ... P80373 12464183 PDBbind: Kd=86uM
    4 1n33:D (3.35) BS02 ZN ? GO:0003723 ... P80373 12464183
    5 1n33:E (3.35) BS01 rna ? GO:0003723 ... Q5SHQ5 12464183 PDBbind: Kd=86uM
    6 1n33:F (3.35) BS01 rna ? GO:0003735 ... Q5SLP8 12464183 PDBbind: Kd=86uM
    7 1n33:G (3.35) BS01 rna ? GO:0000028 ... P17291 12464183 PDBbind: Kd=86uM
    8 1n33:H (3.35) BS01 rna ? GO:0003735 ... P0DOY9 12464183 PDBbind: Kd=86uM
    9 1n33:I (3.35) BS01 rna ? GO:0000049 ... P80374 12464183 PDBbind: Kd=86uM
    10 1n33:J (3.35) BS01 rna ? GO:0000049 ... Q5SHN7 12464183 PDBbind: Kd=86uM
    11 1n33:K (3.35) BS01 rna ? GO:0003735 ... P80376 12464183 PDBbind: Kd=86uM
    12 1n33:L (3.35) BS01 rna ? GO:0000049 ... Q5SHN3 12464183 PDBbind: Kd=86uM
    13 1n33:L (3.35) BS02 MG ? GO:0000049 ... Q5SHN3 12464183
    14 1n33:M (3.35) BS01 rna ? GO:0000049 ... P80377 12464183 PDBbind: Kd=86uM
    15 1n33:N (3.35) BS01 rna ? GO:0003735 ... P0DOY6 12464183 PDBbind: Kd=86uM
    16 1n33:N (3.35) BS02 ZN ? GO:0003735 ... P0DOY6 12464183
    17 1n33:O (3.35) BS01 rna ? GO:0003735 ... Q5SJ76 12464183 PDBbind: Kd=86uM
    18 1n33:P (3.35) BS01 rna ? GO:0003735 ... Q5SJH3 12464183 PDBbind: Kd=86uM
    19 1n33:Q (3.35) BS01 rna ? GO:0003735 ... P0DOY7 12464183 PDBbind: Kd=86uM
    20 1n33:R (3.35) BS01 rna ? GO:0003735 ... Q5SLQ0 12464183 PDBbind: Kd=86uM
    21 1n33:S (3.35) BS01 rna ? GO:0000028 ... Q5SHP2 12464183 PDBbind: Kd=86uM
    22 1n33:T (3.35) BS01 rna ? GO:0003723 ... P80380 12464183 PDBbind: Kd=86uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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