Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jj2:1 (2.4) BS01 rna ? GO:0003735 ... P22452 11483524
    2 1jj2:2 (2.4) BS01 rna ? GO:0000049 ... P32411 11483524
    3 1jj2:2 (2.4) BS02 MG ? GO:0000049 ... P32411 11483524
    4 1jj2:A (2.4) BS01 rna ? GO:0002181 ... P20276 11483524
    5 1jj2:A (2.4) BS02 MG ? GO:0002181 ... P20276 11483524
    6 1jj2:B (2.4) BS01 rna ? GO:0003723 ... P20279 11483524
    7 1jj2:C (2.4) BS01 rna ? GO:0003723 ... P12735 11483524
    8 1jj2:D (2.4) BS01 rna ? GO:0000049 ... P14124 11483524
    9 1jj2:D (2.4) BS02 rna ? GO:0000049 ... P14124 11483524
    10 1jj2:E (2.4) BS01 rna ? GO:0002181 ... P14135 11483524
    11 1jj2:F (2.4) BS01 rna ? GO:0001682 ... P12743 11483524
    12 1jj2:H (2.4) BS01 rna ? GO:0000027 ... P60617 11483524
    13 1jj2:I (2.4) BS01 rna ? GO:0003729 ... P29198 11483524
    14 1jj2:J (2.4) BS01 rna ? GO:0003735 ... P22450 11483524
    15 1jj2:K (2.4) BS01 rna ? GO:0003735 ... P12737 11483524
    16 1jj2:L (2.4) BS01 rna ? GO:0002181 ... P60618 11483524
    17 1jj2:M (2.4) BS01 rna ? GO:0000027 ... P14123 11483524
    18 1jj2:M (2.4) BS02 rna ? GO:0000027 ... P14123 11483524
    19 1jj2:N (2.4) BS01 rna ? GO:0003723 ... P12733 11483524
    20 1jj2:O (2.4) BS01 rna ? GO:0003723 ... P14119 11483524
    21 1jj2:P (2.4) BS01 rna ? GO:0003735 ... P12734 11483524
    22 1jj2:P (2.4) BS02 rna ? GO:0003735 ... P12734 11483524
    23 1jj2:Q (2.4) BS01 rna ? GO:0002181 ... P10970 11483524
    24 1jj2:R (2.4) BS01 rna ? GO:0000027 ... P12732 11483524
    25 1jj2:S (2.4) BS01 rna ? GO:0002181 ... P10972 11483524
    26 1jj2:S (2.4) BS02 MG ? GO:0002181 ... P10972 11483524
    27 1jj2:T (2.4) BS01 rna ? GO:0003735 ... P14116 11483524
    28 1jj2:U (2.4) BS01 rna ? GO:0003735 ... P10971 11483524
    29 1jj2:V (2.4) BS01 rna ? GO:0000463 ... P14121 11483524
    30 1jj2:V (2.4) BS02 rna ? GO:0000463 ... P14121 11483524
    31 1jj2:W (2.4) BS01 rna ? GO:0002181 ... P18138 11483524
    32 1jj2:X (2.4) BS01 rna ? GO:0000166 ... P12736 11483524
    33 1jj2:X (2.4) BS02 MG ? GO:0000166 ... P12736 11483524
    34 1jj2:Y (2.4) BS01 rna ? GO:0003735 ... P60619 11483524
    35 1jj2:Z (2.4) BS01 rna ? GO:0003723 ... P32410 11483524
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218