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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ibm:B (3.31) BS01 rna ? GO:0003735 ... P80371 11340196
    2 1ibm:C (3.31) BS01 rna ? GO:0003676 ... P80372 11340196
    3 1ibm:D (3.31) BS01 rna ? GO:0003723 ... P80373 11340196
    4 1ibm:D (3.31) BS02 MG ? GO:0003723 ... P80373 11340196
    5 1ibm:E (3.31) BS01 rna ? GO:0003723 ... Q5SHQ5 11340196
    6 1ibm:F (3.31) BS01 rna ? GO:0003735 ... Q5SLP8 11340196
    7 1ibm:G (3.31) BS01 rna ? GO:0000028 ... P17291 11340196
    8 1ibm:H (3.31) BS01 rna ? GO:0003735 ... P0DOY9 11340196
    9 1ibm:I (3.31) BS01 rna ? GO:0000049 ... P80374 11340196
    10 1ibm:J (3.31) BS01 rna ? GO:0000049 ... Q5SHN7 11340196
    11 1ibm:K (3.31) BS01 rna ? GO:0003735 ... P80376 11340196
    12 1ibm:L (3.31) BS01 rna ? GO:0000049 ... Q5SHN3 11340196
    13 1ibm:L (3.31) BS02 MG ? GO:0000049 ... Q5SHN3 11340196
    14 1ibm:M (3.31) BS01 rna ? GO:0000049 ... P80377 11340196
    15 1ibm:N (3.31) BS01 rna ? GO:0003735 ... P0DOY6 11340196
    16 1ibm:N (3.31) BS02 ZN ? GO:0003735 ... P0DOY6 11340196
    17 1ibm:O (3.31) BS01 rna ? GO:0003735 ... Q5SJ76 11340196
    18 1ibm:P (3.31) BS01 rna ? GO:0003735 ... Q5SJH3 11340196
    19 1ibm:Q (3.31) BS01 rna ? GO:0003735 ... P0DOY7 11340196
    20 1ibm:R (3.31) BS01 rna ? GO:0003735 ... Q5SLQ0 11340196
    21 1ibm:S (3.31) BS01 rna ? GO:0000028 ... Q5SHP2 11340196
    22 1ibm:T (3.31) BS01 rna ? GO:0003723 ... P80380 11340196
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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