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BioLiP
Download all results in tab-seperated text for 41 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1i94:B (3.2) BS01 rna ? GO:0003735 ... P80371 11296217
    2 1i94:B (3.2) BS02 WO2 ? GO:0003735 ... P80371 11296217
    3 1i94:B (3.2) BS03 WO2 ? GO:0003735 ... P80371 11296217
    4 1i94:C (3.2) BS01 rna ? GO:0003676 ... P80372 11296217
    5 1i94:C (3.2) BS02 WO2 ? GO:0003676 ... P80372 11296217
    6 1i94:D (3.2) BS01 rna ? GO:0003723 ... P80373 11296217
    7 1i94:D (3.2) BS02 MG ? GO:0003723 ... P80373 11296217
    8 1i94:D (3.2) BS03 MG ? GO:0003723 ... P80373 11296217
    9 1i94:E (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 11296217
    10 1i94:E (3.2) BS02 MG ? GO:0003723 ... Q5SHQ5 11296217
    11 1i94:E (3.2) BS03 WO2 ? GO:0003723 ... Q5SHQ5 11296217
    12 1i94:F (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 11296217
    13 1i94:G (3.2) BS01 rna ? GO:0000028 ... P17291 11296217
    14 1i94:G (3.2) BS02 WO2 ? GO:0000028 ... P17291 11296217
    15 1i94:H (3.2) BS01 rna ? GO:0003735 ... P0DOY9 11296217
    16 1i94:H (3.2) BS02 WO2 ? GO:0003735 ... P0DOY9 11296217
    17 1i94:I (3.2) BS01 rna ? GO:0000049 ... P80374 11296217
    18 1i94:J (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 11296217
    19 1i94:J (3.2) BS02 WO2 ? GO:0000049 ... Q5SHN7 11296217
    20 1i94:K (3.2) BS01 rna ? GO:0003735 ... P80376 11296217
    21 1i94:K (3.2) BS02 WO2 ? GO:0003735 ... P80376 11296217
    22 1i94:L (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 11296217
    23 1i94:L (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 11296217
    24 1i94:L (3.2) BS03 MG ? GO:0000049 ... Q5SHN3 11296217
    25 1i94:L (3.2) BS04 MG ? GO:0000049 ... Q5SHN3 11296217
    26 1i94:M (3.2) BS01 rna ? GO:0000049 ... P80377 11296217
    27 1i94:N (3.2) BS01 rna ? GO:0003735 ... P0DOY6 11296217
    28 1i94:N (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 11296217
    29 1i94:O (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 11296217
    30 1i94:P (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 11296217
    31 1i94:P (3.2) BS02 MG ? GO:0003735 ... Q5SJH3 11296217
    32 1i94:Q (3.2) BS01 rna ? GO:0003735 ... P0DOY7 11296217
    33 1i94:Q (3.2) BS02 MG ? GO:0003735 ... P0DOY7 11296217
    34 1i94:Q (3.2) BS03 MG ? GO:0003735 ... P0DOY7 11296217
    35 1i94:R (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 11296217
    36 1i94:R (3.2) BS02 WO2 ? GO:0003735 ... Q5SLQ0 11296217
    37 1i94:S (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 11296217
    38 1i94:T (3.2) BS01 rna ? GO:0003723 ... P80380 11296217
    39 1i94:T (3.2) BS02 MG ? GO:0003723 ... P80380 11296217
    40 1i94:T (3.2) BS03 MG ? GO:0003723 ... P80380 11296217
    41 1i94:T (3.2) BS04 MG ? GO:0003723 ... P80380 11296217
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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